Repository revision
45:a1a923cd89e8

Repository 'bedtools'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bedtools

bedtools TagBed tool metadata
Miscellaneous
tag BAM alignments based on overlaps with interval files
bedtools_tagbed
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_tagbed/2.30.0
2.30.0
bedtools --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_tagbed/2.30.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_tagbed/2.19.0
bedtools_tagbed
Requirements (dependencies defined in the <requirements> tag set)
name version type
bedtools 2.30.0 package
Additional information about this tool
bedtools tag
-i '${inputA}'
-files
#for $file in $inputB
    '$file'
#end for

        #if str($overlap):
            -f $overlap
        #end if
    
$strand
-tag '${tag}'
$field
> '${output}'
    
None
False
Functional tests
name inputs outputs required files
Test-1 inputA: srma_in3.bam
inputB: tagBed1.bed
field: -names
name: value
srma_in3.bam
tagBed1.bed
value