| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_windowbed/2.30.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_windowbed/2.19.0 |
| bedtools_windowbed |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.30.0 | package |
| Additional information about this tool |
bedtools window
#if $inputA.is_of_type('bam'):
-abam '$inputA'
#else:
-a '$inputA'
#end if
-b '$inputB'
$bed
$strandB
#if $addition.addition_select == 'window':
-w $addition.w
#elif $addition.addition_select == 'lr':
-l $addition.l
-r $addition.r
#end if
$original
$number
$nooverlaps
$header
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputA: windowBedA.bed inputB: windowBedB.bed |
name: value |
windowBedA.bed windowBedB.bed value |
| Test-2 |
inputA: windowBedA.bed inputB: windowBedB.bed addition|w: 5000 addition|addition_select: window |
name: value |
windowBedA.bed windowBedB.bed value |
| Test-3 |
inputA: windowBedA.bed inputB: windowBedB.bed addition|l: 200 addition|r: 20000 addition|addition_select: lr |
name: value |
windowBedA.bed windowBedB.bed value |