Repository revision
37:ce3c7f062223

Repository 'bedtools'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bedtools

bedtools MapBed tool metadata
Miscellaneous
apply a function to a column for each overlapping interval
bedtools_map
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.30.0.2
2.30.0.2
bedtools --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.30.0.2 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.19.0
bedtools_map
Requirements (dependencies defined in the <requirements> tag set)
name version type
bedtools 2.30.0 package
Functional tests
name inputs outputs required files
Test-1 inputA: mapBed1.bed
inputB: mapBed2.bed
c_and_o_argument_repeat_0|col: 5
c_and_o_argument_repeat_0|operation: mean
name: value
mapBed1.bed
mapBed2.bed
value
Test-2 inputA: mapBed1.bed
inputB: mapBed2.bed
c_and_o_argument_repeat_0|col: 5
c_and_o_argument_repeat_0|operation: collapse
name: value
mapBed1.bed
mapBed2.bed
value
Test-3 inputA: mapBed1.bed
inputB: mapBed2.bed
strand: -S
c_and_o_argument_repeat_0|col: 5
c_and_o_argument_repeat_0|operation: collapse
name: value
mapBed1.bed
mapBed2.bed
value
Test-4 inputA: mapBed1.bed
inputB: mapBed2.bed
strand: -s
c_and_o_argument_repeat_0|col: 5
c_and_o_argument_repeat_0|operation: collapse
name: value
mapBed1.bed
mapBed2.bed
value
Test-5 inputA: mapBed3.bed
inputB: mapBed4.bed
strand: -s
c_and_o_argument_repeat_0|col: 5
c_and_o_argument_repeat_0|operation: collapse
genome|genome_file_opts|genome: mm9.len
genome|genome_file_opts|genome_file_opts_selector: hist
genome|genome_choose: -g
name: value
mapBed3.bed
mapBed4.bed
mm9.len
value