Repository revision
30:db1841942d2b

Repository 'bedtools'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bedtools

ClosestBed tool metadata
Miscellaneous
ClosestBed
find the closest, potentially non-overlapping interval
bedtools_closestbed
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.27.0.0
2.27.0.0
bedtools --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.27.1
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.27.0.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.26.0.0
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.24.0
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.22.0
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_closestbed/2.19.0
bedtools_closestbed
Requirements (dependencies defined in the <requirements> tag set)
name version type
bedtools 2.27.0 package
Functional tests
name inputs outputs required files
Test-1 inputA: closestBedA.bed
overlap_with|source: history
overlap_with|inputB: closestBedB.bed
attributes: name
closestBedA.bed
closestBedB.bed
name
Test-2 addition: True
inputA: closestBed_a.bed
overlap_with|source: history
overlap_with|inputB: ['closestBed_b1.bed', 'closestBed_b2.bed']
attributes: name
closestBed_a.bed
closestBed_b1.bed
closestBed_b2.bed
name
Test-3 addition: True
mdb: all
inputA: closestBed_a.bed
overlap_with|source: history
overlap_with|inputB: ['closestBed_b1.bed', 'closestBed_b2.bed']
attributes: name
closestBed_a.bed
closestBed_b1.bed
closestBed_b2.bed
name
Test-4 addition2|addition2_select: ref
inputA: closestBed_c.bed
overlap_with|source: history
overlap_with|inputB: closestBed_d.bed
attributes: name
closestBed_c.bed
closestBed_d.bed
name
Test-5 addition2|addition2_select: a
inputA: closestBed_c.bed
overlap_with|source: history
overlap_with|inputB: closestBed_d.bed
attributes: name
closestBed_c.bed
closestBed_d.bed
name
Test-6 k: 3
inputA: closestBedA.bed
overlap_with|source: history
overlap_with|inputB: a.bed
attributes: name
closestBedA.bed
a.bed
name