Repository revision
30:db1841942d2b

Repository 'bedtools'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bedtools

MapBed tool metadata
Miscellaneous
MapBed
apply a function to a column for each overlapping interval
bedtools_map
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.27.0.0
2.27.0.0
bedtools --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.27.0.1
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.27.0.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.26.0.1
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.26.0.0
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.24.1
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.22.1
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.22.0
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.19.0
bedtools_map
Requirements (dependencies defined in the <requirements> tag set)
name version type
bedtools 2.27.0 package
Functional tests
name inputs outputs required files
Test-1 inputB: mapBed2.bed
c_and_o_argument_repeat_0|col: 5
c_and_o_argument_repeat_0|operation: mean
inputA: mapBed1.bed
attributes: name
mapBed1.bed
mapBed2.bed
name
Test-2 inputB: mapBed2.bed
c_and_o_argument_repeat_0|col: 5
c_and_o_argument_repeat_0|operation: collapse
inputA: mapBed1.bed
attributes: name
mapBed1.bed
mapBed2.bed
name
Test-3 inputB: mapBed2.bed
c_and_o_argument_repeat_0|col: 5
c_and_o_argument_repeat_0|operation: collapse
inputA: mapBed1.bed
strand: -S
attributes: name
mapBed1.bed
mapBed2.bed
name
Test-4 inputB: mapBed2.bed
c_and_o_argument_repeat_0|col: 5
c_and_o_argument_repeat_0|operation: collapse
inputA: mapBed1.bed
strand: -s
attributes: name
mapBed1.bed
mapBed2.bed
name
Test-5 genome|genome_file_opts|genome: mm9.len
genome|genome_file_opts|genome_file_opts_selector: hist
inputB: mapBed4.bed
c_and_o_argument_repeat_0|col: 5
genome|genome_choose: -g
inputA: mapBed3.bed
c_and_o_argument_repeat_0|operation: collapse
strand: -s
attributes: name
mapBed3.bed
mapBed4.bed
mm9.len
name