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Kraken taxonomic report tool metadata

Miscellaneous

Name: Kraken taxonomic report

Description: view report of classification for multiple samples

Id: kraken_taxonomy_report

Guid: toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.2

Version: 0.0.2

Version command string: python '${__tool_directory__}/kraken_taxonomy_report.py' --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.3

toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.2 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.1

kraken_taxonomy_report

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

biopython

1.66

package

Functional tests

name

inputs

outputs

required files

Test-1

otu_name:
classification: input_kraken_1.tabular
sanitize_names: True
header_line: True
show_zeros: True
tree: True
intermediate: True
show_rank: True
cluster|summation: True
taxonomy: True
cluster|cluster:
kraken_database: test_db

attributes: name
attributes: name

input_kraken_1.tabular
name

Test-2

otu_name:
classification: input_kraken_1.tabular
sanitize_names: True
header_line: True
show_zeros: True
tree: True
intermediate: True
show_rank: True
cluster|summation: False
taxonomy: True
cluster|cluster:
kraken_database: test_db

attributes: name
attributes: name

input_kraken_1.tabular
name

Test-3

otu_name:
classification: input_kraken_1.tabular
sanitize_names: True
header_line: True
show_zeros: True
tree: True
intermediate: False
show_rank: True
taxonomy: True
cluster|cluster: Species
kraken_database: test_db

attributes: name
attributes: name

input_kraken_1.tabular
name

Test-4

otu_name:
classification: ['input_kraken_1.tabular', 'input_kraken_2.tabular']
sanitize_names: True
header_line: True
show_zeros: True
tree: True
intermediate: False
show_rank: True
taxonomy: True
cluster|cluster: Species
kraken_database: test_db

attributes: name
attributes: name

input_kraken_1.tabular
input_kraken_2.tabular
name