Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/cp_common/cp_common/3.1.9+galaxy2 |
toolshed.g2.bx.psu.edu/repos/bgruening/cp_common/cp_common/3.1.9+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/cp_common/cp_common/3.1.9 |
cp_common |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
python | 3.7 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
images|filter_images: Images only metadata|con_metadata_extraction|extraction_method_0|metadata_extraction_method: Extract from file/folder names metadata|con_metadata_extraction|extraction_method_0|con_metadata_source|file_name_regex: (?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) metadata|con_metadata_extraction|extraction_method_0|con_metadata_source|metadata_source: File name metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|match_all_any: and metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_0|con_match|operator: does metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_0|con_match|contain: contain metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_0|con_match|match_value: im metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_0|con_match|rule_type: file metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_1|con_match|operator: does metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_1|con_match|match_type: istif metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_1|con_match|rule_type: extension metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|extract_metadata_from: Images matching a rule metadata|con_metadata_extraction|extraction_method_1|metadata_extraction_method: Extract from file/folder names metadata|con_metadata_extraction|extraction_method_1|con_metadata_source|folder_name_regex: (?P<folderField1>.*)_(?P<folderField2>[a-zA-Z0-9]+) metadata|con_metadata_extraction|extraction_method_1|con_metadata_source|metadata_source: Folder name metadata|con_metadata_extraction|extraction_method_1|con_metadata_extract_from|extract_metadata_from: All images metadata|con_metadata_extraction|extract: Yes nameandtypes|pixel_space|process_3d: No nameandtypes|con_assign_a_name_to|r_match_rule_0|match_all_any: and nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_0|con_match|operator: does nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_0|con_match|contain: contain nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_0|con_match|match_value: im nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_0|con_match|rule_type: file nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_1|con_match|operator: doesnot nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_1|con_match|match_type: ismonochrome nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_1|con_match|rule_type: image nameandtypes|con_assign_a_name_to|r_match_rule_0|con_select_image_type|name_to_assign: Cell nameandtypes|con_assign_a_name_to|r_match_rule_0|con_select_image_type|select_image_type: Objects nameandtypes|con_assign_a_name_to|r_match_rule_1|match_all_any: and nameandtypes|con_assign_a_name_to|r_match_rule_1|con_select_image_type|name_to_assign: GFP nameandtypes|con_assign_a_name_to|r_match_rule_1|con_select_image_type|select_image_type: Illumination function nameandtypes|con_assign_a_name_to|r_match_rule_2|match_all_any: or nameandtypes|con_assign_a_name_to|r_match_rule_2|r_match_0|con_match|operator: does nameandtypes|con_assign_a_name_to|r_match_rule_2|r_match_0|con_match|match_type: istif nameandtypes|con_assign_a_name_to|r_match_rule_2|r_match_0|con_match|rule_type: extension nameandtypes|con_assign_a_name_to|r_match_rule_2|con_select_image_type|name_to_assign: Actin nameandtypes|con_assign_a_name_to|r_match_rule_2|con_select_image_type|con_set_intensity|set_intensity_range_from: Image metadata nameandtypes|con_assign_a_name_to|r_match_rule_2|con_select_image_type|select_image_type: Grayscale image nameandtypes|con_assign_a_name_to|matching_method: Order nameandtypes|con_assign_a_name_to|assign_a_name_to: Images matching rules groups|con_groups|group_category: field1 groups|con_groups|group_images: Yes |
name: value |
value |
Test-2 |
images|filter_images: Images only metadata|con_metadata_extraction|extraction_method_0|metadata_extraction_method: Extract from file/folder names metadata|con_metadata_extraction|extraction_method_0|con_metadata_source|file_name_regex: (?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) metadata|con_metadata_extraction|extraction_method_0|con_metadata_source|metadata_source: File name metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|match_all_any: and metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_0|con_match|operator: does metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_0|con_match|contain: contain metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_0|con_match|match_value: im metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_0|con_match|rule_type: file metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_1|con_match|operator: does metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_1|con_match|match_type: istif metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|r_match_1|con_match|rule_type: extension metadata|con_metadata_extraction|extraction_method_0|con_metadata_extract_from|extract_metadata_from: Images matching a rule metadata|con_metadata_extraction|extraction_method_1|metadata_extraction_method: Extract from file/folder names metadata|con_metadata_extraction|extraction_method_1|con_metadata_source|folder_name_regex: (?P<folderField1>.*)_(?P<folderField2>[a-zA-Z0-9]+) metadata|con_metadata_extraction|extraction_method_1|con_metadata_source|metadata_source: Folder name metadata|con_metadata_extraction|extraction_method_1|con_metadata_extract_from|extract_metadata_from: All images metadata|con_metadata_extraction|extract: Yes nameandtypes|pixel_space|process_3d: No nameandtypes|con_assign_a_name_to|r_match_rule_0|match_all_any: and nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_0|con_match|operator: does nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_0|con_match|contain: contain nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_0|con_match|match_value: im nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_0|con_match|rule_type: file nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_1|con_match|operator: doesnot nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_1|con_match|match_type: ismonochrome nameandtypes|con_assign_a_name_to|r_match_rule_0|r_match_1|con_match|rule_type: image nameandtypes|con_assign_a_name_to|r_match_rule_0|con_select_image_type|name_to_assign: Cell nameandtypes|con_assign_a_name_to|r_match_rule_0|con_select_image_type|select_image_type: Objects nameandtypes|con_assign_a_name_to|r_match_rule_1|match_all_any: and nameandtypes|con_assign_a_name_to|r_match_rule_1|con_select_image_type|name_to_assign: GFP nameandtypes|con_assign_a_name_to|r_match_rule_1|con_select_image_type|select_image_type: Illumination function nameandtypes|con_assign_a_name_to|r_match_rule_2|match_all_any: or nameandtypes|con_assign_a_name_to|r_match_rule_2|r_match_0|con_match|operator: does nameandtypes|con_assign_a_name_to|r_match_rule_2|r_match_0|con_match|match_type: istif nameandtypes|con_assign_a_name_to|r_match_rule_2|r_match_0|con_match|rule_type: extension nameandtypes|con_assign_a_name_to|r_match_rule_2|con_select_image_type|name_to_assign: Actin nameandtypes|con_assign_a_name_to|r_match_rule_2|con_select_image_type|con_set_intensity|set_intensity_range_from: Image metadata nameandtypes|con_assign_a_name_to|r_match_rule_2|con_select_image_type|select_image_type: Grayscale image nameandtypes|con_assign_a_name_to|matching_method: Order nameandtypes|con_assign_a_name_to|assign_a_name_to: Images matching rules groups|con_groups|group_images: No |
name: value |
value |