| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.1.0 |
| OpenSwathAssayGenerator |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.5 | package |
| openms-thirdparty | 2.5 | package |
| blast | 2.9.0 | package |
| openjdk | 8.0.192 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: OpenSwathAssayGenerator_input.TraML out_type: TraML min_transitions: 6 max_transitions: 6 allowed_fragment_types: b,y allowed_fragment_charges: 2,3 enable_detection_specific_losses: True enable_detection_unspecific_losses: False precursor_mz_threshold: 0.025 precursor_lower_mz_limit: 400.0 precursor_upper_mz_limit: 1200.0 product_mz_threshold: 0.025 product_lower_mz_limit: 350.0 product_upper_mz_limit: 2000.0 enable_ipf: False adv_opts_cond|max_num_alternative_localizations: 10000 adv_opts_cond|disable_identification_ms2_precursors: False adv_opts_cond|disable_identification_specific_losses: False adv_opts_cond|enable_identification_unspecific_losses: False adv_opts_cond|enable_swath_specifity: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathAssayGenerator_input.TraML value |
| Test-2 |
in: OpenSwathAssayGenerator_input_2.TraML out_type: TraML min_transitions: 6 max_transitions: 6 allowed_fragment_types: b,y allowed_fragment_charges: 1,2,3,4 enable_detection_specific_losses: False enable_detection_unspecific_losses: False precursor_mz_threshold: 0.025 precursor_lower_mz_limit: 400.0 precursor_upper_mz_limit: 1200.0 product_mz_threshold: 0.025 product_lower_mz_limit: 350.0 product_upper_mz_limit: 2000.0 unimod_file: OpenSwathAssayGenerator_input_2_unimod.xml enable_ipf: True adv_opts_cond|max_num_alternative_localizations: 10000 adv_opts_cond|disable_identification_ms2_precursors: False adv_opts_cond|disable_identification_specific_losses: False adv_opts_cond|enable_identification_unspecific_losses: False adv_opts_cond|enable_swath_specifity: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathAssayGenerator_input_2.TraML OpenSwathAssayGenerator_input_2_unimod.xml value |
| Test-3 |
in: OpenSwathAssayGenerator_input_2.TraML out_type: TraML min_transitions: 6 max_transitions: 6 allowed_fragment_types: b,y allowed_fragment_charges: 1,2,3,4 enable_detection_specific_losses: False enable_detection_unspecific_losses: False precursor_mz_threshold: 0.025 precursor_lower_mz_limit: 400.0 precursor_upper_mz_limit: 1200.0 product_mz_threshold: 0.025 product_lower_mz_limit: 350.0 product_upper_mz_limit: 2000.0 unimod_file: OpenSwathAssayGenerator_input_3_unimod.xml enable_ipf: True adv_opts_cond|max_num_alternative_localizations: 10000 adv_opts_cond|disable_identification_ms2_precursors: False adv_opts_cond|disable_identification_specific_losses: False adv_opts_cond|enable_identification_unspecific_losses: False adv_opts_cond|enable_swath_specifity: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
OpenSwathAssayGenerator_input_2.TraML OpenSwathAssayGenerator_input_3_unimod.xml value |