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Repository revision

Revision: 15:2c4635f5be47

Repository 'khmer'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/crusoe/khmer

Abundance Distribution (all-in-one) tool metadata

Miscellaneous

Name: Abundance Distribution (all-in-one)

Description: Calculate abundance distribution of the k-mers in a given sequence file.

Id: gedlab-khmer-abundance-dist-single

Guid: toolshed.g2.bx.psu.edu/repos/crusoe/khmer/gedlab-khmer-abundance-dist-single/2.0-5

Version: 2.0-5

Version command string: abundance-dist-single.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/crusoe/khmer/gedlab-khmer-abundance-dist-single/2.0-5 (this tool)

toolshed.g2.bx.psu.edu/repos/crusoe/khmer/gedlab-khmer-abundance-dist-single/2.0rc1-1

gedlab-khmer-abundance-dist-single

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

khmer

2.0

package

Functional tests

name

inputs

outputs

required files

Test-1

parameters|ksize: 17
parameters|n_tables: 2
input_sequence_filename: test-abund-read-2.fa
parameters|type: specific
parameters|tablesize_specific: 1e7

output_histogram_filename: None

test-abund-read-2.fa

Test-2

parameters|tablesize_specific: 1e7
input_sequence_filename: test-abund-read-2.fa
bigcount: False
parameters|ksize: 17
parameters|n_tables: 2
parameters|type: specific

output_histogram_filename: None

test-abund-read-2.fa