Repository revision
0:2e7f0da431e3

Repository 'sortmerna'
hg clone https://toolshed.g2.bx.psu.edu/repos/bonsai/sortmerna

Filter with SortMeRNA tool metadata
Miscellaneous
Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
sortmerna_wrapper
toolshed.g2.bx.psu.edu/repos/bonsai/sortmerna/sortmerna_wrapper/1.0
1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bonsai/sortmerna/sortmerna_wrapper/1.0 (this tool)
sortmerna_wrapper
Requirements (dependencies defined in the <requirements> tag set)
name version type
sortmerna 1.7 package
Functional tests
name inputs outputs required files
Test-1 read_family_selector: I
input_reads: sortmerna_wrapper_in1.fastq
sequencing_type_selector: not_paired
strand_search:
databases_selector: cached
input_databases: rfam-5.8s,rfam-5s
outputs_selected: accept,other
log:
options_type_selector: less
output_accept: sortmerna_wrapper_accept1.fastq
output_other: sortmerna_wrapper_other1.fastq
sortmerna_wrapper_in1.fastq
sortmerna_wrapper_accept1.fastq
sortmerna_wrapper_other1.fastq