| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/glimmer3/glimmer_build-icm/0.2 (this tool) |
| glimmer_build-icm |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| glimmer | 3.02b | package |
| Additional information about this tool |
build-icm
--depth $depth
#if $no_stops:
--no_stops
#end if
--period $period
--width $width
#if $stop_codon_opts.stop_codon_opts_selector == "gb":
--trans_table "${stop_codon_opts.genbank_gencode}"
#else:
--stop_codons "${stop_codon_opts.stop_codons}"
#end if
$outfile < $infile 2>&1;
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: streptomyces_Tu6071_plasmid_genes.fasta depth: 7 period: 3 width: 12 no_stops: genbank_gencode: 11 |
outfile: streptomyces_Tu6071_plasmid_genes.icm |
streptomyces_Tu6071_plasmid_genes.fasta streptomyces_Tu6071_plasmid_genes.icm |