| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/glimmer3/glimmer_knowlegde-based/0.2 (this tool) |
| glimmer_knowlegde-based |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| glimmer | 3.02b | package |
| biopython | 1.61 | package |
| GLIMMER_SCRIPT_PATH | not provided | set_environment |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
seq_input: streptomyces_Tu6071_genomic.fasta icm_input: streptomyces_Tu6071_plasmid_genes.icm max_olap: 50 gene_len: 90 threshold: 30 gc_percent: 0.0 linear: --linear no_indep: extend: start_codons: atg,gtg,ttg genbank_gencode: 11 detailed_report: report: |
genes_output: glimmer_w_icm_trans-table-11_genomic.fasta |
streptomyces_Tu6071_genomic.fasta streptomyces_Tu6071_plasmid_genes.icm glimmer_w_icm_trans-table-11_genomic.fasta |