Repository revision
2:b1ad88bbc5fa

Repository 'glimmer3'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/glimmer3

Glimmer3 tool metadata
Miscellaneous
Glimmer3
Predict ORFs in prokaryotic genomes (not knowlegde-based)
glimmer_not-knowlegde-based
toolshed.g2.bx.psu.edu/repos/bgruening/glimmer3/glimmer_not-knowlegde-based/0.2
0.2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/glimmer3/glimmer_not-knowlegde-based/0.2 (this tool)
glimmer_not-knowlegde-based
Requirements (dependencies defined in the <requirements> tag set)
name version type
glimmer 3.02b package
biopython 1.61 package
Functional tests
name inputs outputs required files
Test-1 input: streptomyces_Tue6071_plasmid_genomic.fasta
overlap: 0
gene_length: 110
threshold: 30
linear: true
detailed_report:
report:
genes_output: glimmer_wo_icm_trans-table-11_plasmid_genomic.fasta
streptomyces_Tue6071_plasmid_genomic.fasta
glimmer_wo_icm_trans-table-11_plasmid_genomic.fasta