Repository revision
5:2818b428a5c5

Repository 'hicexplorer_hicaverageregions'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions

hicAverageRegions tool metadata
Miscellaneous
sums Hi-C contacts around given reference points and computes their average.
hicexplorer_hicaverageregions
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.4.3.0
3.4.3.0
hicAverageRegions --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.4.3.0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.3.1.0
hicexplorer_hicaverageregions
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.4.3 package
Functional tests
name inputs outputs required files
Test-1 matrix_h5_cooler: small_test_matrix.cool
regions: hicAverageRegions/regions.bed
rangeFormat_conditional|upstreamRange: 100000
rangeFormat_conditional|downstreamRange: 100000
rangeFormat_conditional|rangeFormat_selector: optionGenomicUnits
name: value
small_test_matrix.cool
hicAverageRegions/regions.bed
value
Test-2 matrix_h5_cooler: small_test_matrix.cool
regions: hicAverageRegions/regions.bed
rangeFormat_conditional|upstreamRange: 100
rangeFormat_conditional|downstreamRange: 100
rangeFormat_conditional|rangeFormat_selector: optionBinUnits
name: value
small_test_matrix.cool
hicAverageRegions/regions.bed
value