| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/varscan_mpileup/varscan_mpileup/2.4.3.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/varscan_mpileup/varscan_mpileup/2.4.3.0 |
| varscan_mpileup |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| varscan | 2.4.3 | package |
| gawk | 4.2.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: test_in1.pileup cmd: mpileup2cns min_coverage: 8 min_reads2: 2 min_avg_qual: 15 min_var_freq: 0.01 min_freq_for_hom: 0.75 p_value: 0.99 strand_filter: no sample_names: |
name: value |
test_in1.pileup value |