| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: sixpack90/5.0.0+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: sixpack90/5.0.0.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: sixpack90/5.0.0 |
| EMBOSS: sixpack90 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| emboss | 5.0.0 | package |
| perl | 5.26 | package |
| Additional information about this tool |
sixpack -sequence '$input1' -outfile '$ofile1' -outseq '$ofile2' -table $table -firstorf $firstorf -lastorf $lastorf -mstart $mstart -reverse $reverse -orfminsize $orfminsize
#if str($uppercase):
-uppercase '$uppercase'
#end if
-number $number -width $width -length $length -margin $margin -name $disp_name -description $description -offset $offset -html $html_out1 -osformat $out_format2 -auto
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input1: 2.fasta table: 0 firstorf: no lastorf: no mstart: no reverse: no orfminsize: 1 uppercase: number: no width: 60 length: 0 margin: 10 disp_name: no description: no offset: 1 html_out1: no out_format2: fasta |
name: value name: value |
2.fasta value |