Repository revision
12:832c20329690

Repository 'emboss_5'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/emboss_5

getorf tool metadata
Miscellaneous
getorf
Finds and extracts open reading frames (ORFs)
EMBOSS: getorf42
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: getorf42/5.0.0.1
5.0.0.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: getorf42/5.0.0.1 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: getorf42/5.0.0
EMBOSS: getorf42
Requirements (dependencies defined in the <requirements> tag set)
name version type
emboss 5.0.0 package
Functional tests
name inputs outputs required files
Test-1 flanking: 100
input1: 2.fasta
out_format1: fasta
reverse: yes
minsize: 30
maxsize: 1000000
methionine: yes
table: 0
find: 0
circular: no
out_file1: emboss_getorf_out.fasta
2.fasta
emboss_getorf_out.fasta