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Repository revision

Revision: 17:ce385837c160

Repository 'emboss_5'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/emboss_5

cpgreport tool metadata

Miscellaneous

Name: cpgreport

Description: Reports all CpG rich regions

Id: EMBOSS: cpgreport16

Guid: toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: cpgreport16/5.0.0.1

Version: 5.0.0.1

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: cpgreport16/5.0.0.1 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: cpgreport16/5.0.0

EMBOSS: cpgreport16

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

emboss

5.0.0

package

perl

5.26

package

Additional information about this tool

Command:

cpgreport
      -sequence '$input1'
      -outfile '$out_file1'
      -outfeat '$out_file2'
      -offormat3 $out_format2
      -score $score
      -auto

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

input1: 2.fasta
score: 17
out_format2: embl

name: value

2.fasta
value