Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: getorf42/5.0.0.1 (this tool) |
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: getorf42/5.0.0 |
EMBOSS: getorf42 |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
emboss | 5.0.0 | package |
perl | 5.26 | package |
Additional information about this tool |
getorf -sequence '$input1' -outseq '$out_file1' -table $table -minsize $minsize -maxsize $maxsize -find $find -methionine $methionine -circular $circular -reverse $reverse -flanking $flanking -osformat2 $out_format1 -auto
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input1: 2.fasta table: 0 minsize: 30 maxsize: 1000000 find: 0 methionine: yes circular: no reverse: yes flanking: 100 out_format1: fasta |
name: value |
2.fasta value |