Repository revision
17:ce385837c160

Repository 'emboss_5'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/emboss_5

getorf tool metadata
Miscellaneous
getorf
Finds and extracts open reading frames (ORFs)
EMBOSS: getorf42
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: getorf42/5.0.0.1
5.0.0.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: getorf42/5.0.0.1 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: getorf42/5.0.0
EMBOSS: getorf42
Requirements (dependencies defined in the <requirements> tag set)
name version type
emboss 5.0.0 package
perl 5.26 package
Additional information about this tool
getorf -sequence '$input1' -outseq '$out_file1' -table $table -minsize $minsize -maxsize $maxsize -find $find -methionine $methionine -circular $circular -reverse $reverse -flanking $flanking
  -osformat2 $out_format1 -auto
None
False
Functional tests
name inputs outputs required files
Test-1 input1: 2.fasta
table: 0
minsize: 30
maxsize: 1000000
find: 0
methionine: yes
circular: no
reverse: yes
flanking: 100
out_format1: fasta
name: value
2.fasta
value