Repository revision
17:ce385837c160

Repository 'emboss_5'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/emboss_5

trimest tool metadata
Miscellaneous
trimest
Trim poly-A tails off EST sequences
EMBOSS: trimest102
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: trimest102/5.0.0.1
5.0.0.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: trimest102/5.0.0.1 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: trimest102/5.0.0
EMBOSS: trimest102
Requirements (dependencies defined in the <requirements> tag set)
name version type
emboss 5.0.0 package
perl 5.26 package
Additional information about this tool
trimest -sequence '$input1' -outseq '$out_file1' -minlength $minlength -mismatches $mismatches -reverse $reverse -tolower $tolower -fiveprime $fiveprime -osformat2 $out_format1
  -auto
None
False
Functional tests
name inputs outputs required files
Test-1 input1: 2.fasta
minlength: 4
mismatches: 1
reverse: yes
tolower: no
fiveprime: yes
out_format1: fasta
name: value
2.fasta
value