Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_metastats/mothur_metastats/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_metastats/mothur_metastats/1.36.1.0 |
mothur_metastats |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$otu' otu.dat && ln -s '$design' design.dat && echo 'metastats( shared=otu.dat, design=design.dat, #if $label: label=${ str($label).replace(",","-") }, #end if #if $groups: groups=${ str($groups).replace(",","-") }, #end if #if $sets: sets=${ str($sets).replace(",","-") }, #end if iters=$iters, threshold=$threshold, processors='\${GALAXY_SLOTS:-8}' )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
otu: amazon.an.shared design: toymothur.design2 savelog: True |
name: value |
amazon.an.shared toymothur.design2 value |
Test-2 |
otu: amazon.an.shared design: toymothur.design2 label: ['0.03', '0.05', '0.23'] sets: ['tardis', 'dalek'] groups: ['forest', 'pasture'] iters: 42 threshold: 0.1 savelog: True |
name: value |
amazon.an.shared toymothur.design2 value |