| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy5 |
| toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3.1t.1 |
| snpEff_build_gb |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| snpeff | 4.3.1t | package |
| python | 3.6 | package |
| biopython | 1.70 | package |
| python-magic | 0.4.15 | package |
| libmagic | 5.32 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_type|input_type_selector: gb genome_version: pBR322 input_type|input_gbk: pBR322.gbk |
attributes: name attributes: name |
pBR322.gbk name |
| Test-2 |
input_type|input_type_selector: gb genome_version: pBR322 input_type|input_gbk: pBR322.gbk.gz |
attributes: name attributes: name |
pBR322.gbk.gz name |
| Test-3 |
input_type|input_type_selector: gff genome_version: pBR322 input_type|input_gff: pBR322.gff3 input_type|reference_source|reference_source_selector: history input_type|reference_source|input_fasta: pBR322_test2.fna |
attributes: name |
pBR322.gff3 pBR322_test2.fna name |
| Test-4 |
input_type|input_type_selector: gff genome_version: pBR322 input_type|input_gff: pBR322.gff3 input_type|reference_source|reference_source_selector: history input_type|reference_source|input_fasta: pBR322_test2.fna.gz |
attributes: name |
pBR322.gff3 pBR322_test2.fna.gz name |
| Test-5 |
input_type|input_type_selector: gtf genome_version: Saccharomyces_mito input_type|reference_source|input_fasta: Saccharomyces_mito.fa.gz input_type|reference_source|reference_source_selector: history input_type|input_gtf: Saccharomyces_mito.gtf |
attributes: name |
Saccharomyces_mito.gtf Saccharomyces_mito.fa.gz name |