Repository revision
31:3aae4f16ac9e

Repository 'snpeff'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpeff

SnpEff download: tool metadata
Miscellaneous
download a pre-built database
snpEff_download
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/5.2+galaxy1
5.2+galaxy1
snpEff -version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/5.2+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/3.4
snpEff_download
Requirements (dependencies defined in the <requirements> tag set)
name version type
snpeff 5.2 package
Additional information about this tool
snpEff download -dataDir "\$PWD/temp" -v '$genome_version' &&
mkdir -p '$snpeff_db.files_path' &&
mv temp/'$genome_version' '$snpeff_db.files_path'
    
None
False
Functional tests
name inputs outputs required files
Test-1 genome_version: ebola_zair