Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/ebi-gxa/gtf2gene_list/_ensembl_gtf2gene_list/1.52.0+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/ebi-gxa/gtf2gene_list/_ensembl_gtf2gene_list/1.42.1+galaxy6 |
toolshed.g2.bx.psu.edu/repos/ebi-gxa/gtf2gene_list/_ensembl_gtf2gene_list/1.42.1+galaxy5 |
toolshed.g2.bx.psu.edu/repos/ebi-gxa/gtf2gene_list/_ensembl_gtf2gene_list/1.42.1+galaxy4 |
toolshed.g2.bx.psu.edu/repos/ebi-gxa/gtf2gene_list/_ensembl_gtf2gene_list/1.42.1+galaxy3 |
toolshed.g2.bx.psu.edu/repos/ebi-gxa/gtf2gene_list/_ensembl_gtf2gene_list/1.42.1+galaxy2 |
toolshed.g2.bx.psu.edu/repos/ebi-gxa/gtf2gene_list/_ensembl_gtf2gene_list/1.42.1+galaxy1 |
toolshed.g2.bx.psu.edu/repos/ebi-gxa/gtf2gene_list/_ensembl_gtf2gene_list/1.42.1+galaxy0 |
_ensembl_gtf2gene_list |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
atlas-gene-annotation-manipulation | 1.0.1 | package |
Additional information about this tool |
ln -s '$gtf_input' input.gtf; gtf2featureAnnotation.R --gtf-file input.gtf #if $noheader --no-header #end if #if $version_transcripts --version-transcripts #end if #if $mito.mark_mito --mito --mito-chr "${mito.mito_chr}" --mito-biotypes "${mito.mito_biotypes}" #end if #if $cdnas.parse_cdnas --parse-cdnas "${cdnas.fasta_input}" --parse-cdna-field "${cdnas.cdnas_field}" #if $cdnas.filter_cdnas --filter-cdnas-output "${fasta_output}" #end if #if $cdnas.parse_cdna_names --parse-cdna-names #end if #if $fill_empty --fill-empty "${fill_empty}" #end if #end if --feature-type "${feature_type}" --first-field "${first_field}" --output-file annotation.txt --fields "${fields}"
Functional tests |
name | inputs | outputs | required files |
Test-1 |
gtf_input: test.gtf |
name: value |
test.gtf value |