| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_reducedim/monocle3_reduceDim/0.1.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_reducedim/monocle3_reduceDim/0.1.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_reducedim/monocle3_reduceDim/0.1.2+galaxy0 |
| monocle3_reduceDim |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| monocle3-cli | 0.0.7 | package |
| Additional information about this tool |
LANG=en_US.UTF-8 monocle3 reduceDim
#if $max_components
--max-components '${max_components}'
#end if
--reduction-method '${reduction_method}'
--preprocess-method '${preprocess_method}'
--input-object-format '${input_object_format}' '${input_object_file}'
--output-object-format '${output_object_format}' output.RDS
#if $introspective
--introspective
#end if
#if $verbose
--verbose
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_object_format: cds3 max_components: 2 output_object_format: cds3 reduction_method: UMAP input_object_file: input.RDS preprocess_method: PCA |
attributes: name |
input.RDS name |