| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.2 |
| toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/1.0.6 |
| toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/1.0.4 |
| toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/1.0.3 |
| bam_to_sam |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.20 | package |
| Additional information about this tool |
samtools view -o '${output1}' ${header} '${input1}'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input1: bam_to_sam_in1.bam header: -h |
name: value |
bam_to_sam_in1.bam value |
| Test-2 |
input1: bam_to_sam_in1.bam header: -H |
name: value |
bam_to_sam_in1.bam value |
| Test-3 |
input1: bam_to_sam_in1.bam header: |
name: value |
bam_to_sam_in1.bam value |