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BAM-to-SAM tool metadata

Miscellaneous

Name: BAM-to-SAM

Description: convert BAM to SAM

Id: bam_to_sam

Guid: toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.4

Version: 2.0.4

Version command string: samtools 2>&1 | grep Version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.4 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.2

toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1

toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0

toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/1.0.6

toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/1.0.4

toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/1.0.3

bam_to_sam

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

samtools

1.15.1

package

Additional information about this tool

Command:

samtools view -o '${output1}' ${header} '${input1}'

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

input1: bam_to_sam_in1.bam
header: -h

name: value

bam_to_sam_in1.bam
value

Test-2

input1: bam_to_sam_in1.bam
header: -H

name: value

bam_to_sam_in1.bam
value

Test-3

input1: bam_to_sam_in1.bam
header:

name: value

bam_to_sam_in1.bam
value