| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_clustering/raceid_clustering/3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_clustering/raceid_clustering/3.0.2.1 (this tool) |
| raceid_clustering |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| r-raceid | 0.1.1 | package |
| bioconductor-scran | 1.6.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputrds: matrix.filter.rdat |
attributes: name attributes: name attributes: name |
matrix.filter.rdat name |
| Test-2 |
tsne|perplexity: 30 outlier|use|rfseed: 12345 outlier|final: False tsne|use|initial_cmd: True outlier|use|probthr: 0.001 clust|use|bootnr: 50 clust|use|fselect: True clust|funcluster: kmedoids outlier|outlg: 2 outlier|use|nbfactor: 5 clust|metric: pearson outlier|use|def: no clust|use|rseed: 17000 clust|use|sat: True tsne|use|def: no outlier|use|outdistquant: 0.95 outlier|outminc: 5 inputrds: matrix.filter.rdat tsne|use|rseed_tsne: 15555 clust|use|clustnr: 30 tsne|knn: 10 clust|use|def: no |
attributes: name attributes: name |
matrix.filter.rdat name |
| Test-3 |
tsne|perplexity: 20 outlier|use|rfseed: 12345 outlier|final: True tsne|use|initial_cmd: False outlier|use|probthr: 0.01 clust|use|bootnr: 30 clust|use|fselect: False clust|use|cln: 10 outlier|outlg: 5 outlier|use|nbfactor: 5 clust|metric: euclidean outlier|use|def: no clust|use|samp: 10 clust|use|rseed: 17000 clust|use|sat: False clust|use|knn: 5 outlier|use|nbtree: 10 tsne|use|def: no clust|funcluster: hclust outlier|use|outdistquant: 0.5 outlier|outminc: 3 inputrds: matrix.filter.rdat tsne|use|rseed_tsne: 15555 clust|use|clustnr: 10 tsne|knn: 6 clust|use|def: no |
attributes: name attributes: name |
matrix.filter.rdat name |