| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/genrich/genrich/0.5+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/genrich/genrich/0.5+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/genrich/genrich/0.5 |
| genrich |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| genrich | 0.5 | package |
| samtools | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
output_options|bedgraph1: True atac_options|atac: True output_options|bed: True treatment|input_treatment_file: atac_test.bam output_options|bedgraph2: True |
attributes: name attributes: name attributes: name attributes: name |
atac_test.bam name |
| Test-2 |
output_options|bedgraph1: True control|c_multiple|input_control_file: CTCF_PE_CTRL_chr22.bam output_options|bedgraph2: True output_options|bed: True treatment|input_treatment_file: CTCF_PE_ChIP_chr22.bam control|c_select: Yes |
attributes: name attributes: name attributes: name attributes: name |
CTCF_PE_ChIP_chr22.bam CTCF_PE_CTRL_chr22.bam name |
| Test-3 |
treatment|t_multi_select: Yes output_options|bed: True control|c_multiple|c_multi_select: Yes control|c_multiple|input_control_file: ['CTCF_PE_CTRL_chr22.bam', 'CTCF_PE_CTRL_chr22_2.bam'] output_options|bedgraph2: True output_options|bedgraph1: True treatment|input_treatment_file: ['CTCF_PE_ChIP_chr22.bam', 'CTCF_PE_ChIP_chr22_2.bam'] control|c_select: Yes |
attributes: name attributes: name attributes: name attributes: name |
CTCF_PE_ChIP_chr22.bam CTCF_PE_ChIP_chr22_2.bam CTCF_PE_CTRL_chr22.bam CTCF_PE_CTRL_chr22_2.bam name |