Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/spades_rnaviralspades/spades_rnaviralspades/3.15.3+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/spades_rnaviralspades/spades_rnaviralspades/3.15.3+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/spades_rnaviralspades/spades_rnaviralspades/3.15.3+galaxy0 |
spades_rnaviralspades |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
spades | 3.15.3 | package |
zip | 3.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
singlePaired|input1: ecoli_1K.fastq.gz singlePaired|sPaired: paired_interlaced |
name: value name: value name: value name: value |
ecoli_1K.fastq.gz value |
Test-2 |
singlePaired|input1: ecoli_1K_1.fastq.gz singlePaired|input2: ecoli_1K_2.fastq.gz singlePaired|sPaired: paired mode_sel: ['--disable-rr', '--iontorrent'] phred_offset: 33 optional_output: ['ag', 'ags', 'cn', 'cp', 'cs', 'cr', 'sc', 'sp', 'ss', 'l'] |
name: value name: value name: value name: value name: value name: value name: value name: value name: value |
ecoli_1K_1.fastq.gz ecoli_1K_2.fastq.gz value |
Test-3 |
singlePaired|input1: ecoli_1K_1.fastq.gz singlePaired|input2: ecoli_1K_2.fastq.gz singlePaired|sPaired: paired |
name: value name: value name: value name: value |
ecoli_1K_1.fastq.gz ecoli_1K_2.fastq.gz value |
Test-4 |
singlePaired|input1: ecoli_1K.fastq.gz singlePaired|sPaired: single additional_reads|singlePaired|input1: ecoli_1K_1.fastq.gz additional_reads|singlePaired|input2: ecoli_1K_2.fastq.gz additional_reads|singlePaired|sPaired: paired additional_reads|selector: true arf|sanger: ecoli_1K.fastq.gz arf|nanopore: ecoli_1K.fastq.gz arf|pacbio: ecoli_1K.fastq.gz arf|trusted_contigs: ecoli_1K.fasta.gz |
name: value name: value name: value name: value |
ecoli_1K.fastq.gz ecoli_1K_1.fastq.gz ecoli_1K_2.fastq.gz ecoli_1K.fasta.gz value |
Test-5 |
singlePaired|input1: ecoli_1K.fastq.gz singlePaired|sPaired: single additional_reads|singlePaired|input1: ecoli_1K_1.fastq.gz additional_reads|singlePaired|input2: ecoli_1K_2.fastq.gz additional_reads|singlePaired|sPaired: paired additional_reads|library_number: false additional_reads|selector: true |
name: value name: value name: value name: value |
ecoli_1K.fastq.gz ecoli_1K_1.fastq.gz ecoli_1K_2.fastq.gz value |