Repository revision
5:ba96ca3496a2

Repository 'proteore_build_protein_interaction_maps'
hg clone https://toolshed.g2.bx.psu.edu/repos/proteore/proteore_build_protein_interaction_maps

Build Protein interaction network tool metadata
Miscellaneous
[BioGRID, BioPlex, HuMAP]
build_protein_interaction_maps
toolshed.g2.bx.psu.edu/repos/proteore/proteore_build_protein_interaction_maps/build_protein_interaction_maps/2020.02.06
2020.02.06
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/proteore/proteore_build_protein_interaction_maps/build_protein_interaction_maps/2020.02.06 (this tool)
toolshed.g2.bx.psu.edu/repos/proteore/proteore_build_protein_interaction_maps/build_protein_interaction_maps/2020.01.23
toolshed.g2.bx.psu.edu/repos/proteore/proteore_build_protein_interaction_maps/build_protein_interaction_maps/2019.01.23
toolshed.g2.bx.psu.edu/repos/proteore/proteore_build_protein_interaction_maps/build_protein_interaction_maps/2019.06.27
toolshed.g2.bx.psu.edu/repos/proteore/proteore_build_protein_interaction_maps/build_protein_interaction_maps/2019.03.12.2
toolshed.g2.bx.psu.edu/repos/proteore/proteore_build_protein_interaction_maps/build_protein_interaction_maps/2019.03.08
build_protein_interaction_maps
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 input|ncol: c1
input|header: True
input|file: Lacombe_geneID.tsv
database|ref_file: tool-data/Human_bioplex_2019-03-01
database|ref: bioplex
database|id_type: UniProt-AC
input|ids: file
attributes: name
attributes: name
Lacombe_geneID.tsv
name
Test-2 input|ncol: c4
input|header: True
input|file: Lacombe_geneID.tsv
database|ref_file: tool-data/Human_humap_2019-03-01
database|ref: humap
database|id_type: GeneID
input|ids: file
attributes: name
attributes: name
Lacombe_geneID.tsv
name
Test-3 input|ncol: c4
input|header: True
input|file: Lacombe_geneID.tsv
database|ref_file: tool-data/Human_biogrid_2019-03-01
database|ref: biogrid
database|id_type: GeneID
input|ids: file
attributes: name
attributes: name
Lacombe_geneID.tsv
name
Test-4 input|ncol: c2
input|header: True
input|file: Wilson-foie-souris-up_geneID.tsv
database|ref_file: tool-data/Mouse_biogrid_2019-03-01
database|ref: biogrid
database|id_type: GeneID
input|ids: file
attributes: name
attributes: name
Wilson-foie-souris-up_geneID.tsv
name
Test-5 input|ncol: c4
input|header: True
input|file: Rattus_Hameza_dataset_geneID.tsv
database|ref_file: tool-data/Rat_biogrid_2019-03-01
database|ref: biogrid
database|id_type: GeneID
input|ids: file
attributes: name
attributes: name
Rattus_Hameza_dataset_geneID.tsv
name