| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.4.30 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.4.3+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.4.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.4.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.7+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.2.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.1.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.1.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.1.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.0.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.0.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.0.2+galaxy0 |
| chira_merge |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| chira | 1.4.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
alignments: alignments.bed annotation|choice: no reference|ref_fasta1: ref1.fasta reference|ref_fasta2: ref2.fasta reference|ref_type: split |
name: value name: value |
alignments.bed ref1.fasta ref2.fasta value |
| Test-2 |
alignments: alignments.bed annotation|gtf: annotation.gtf annotation|choice: yes reference|ref_fasta1: ref1.fasta reference|ref_fasta2: ref2.fasta reference|ref_type: split |
name: value name: value |
alignments.bed annotation.gtf ref1.fasta ref2.fasta value |
| Test-3 |
alignments: alignments.bed annotation|gtf: annotation.gtf annotation|choice: yes merge|min_cluster_height: 0 merge|min_block_height: 1 merge|mode: blockbuster reference|ref_fasta1: ref1.fasta reference|ref_fasta2: ref2.fasta reference|ref_type: split |
name: value name: value |
alignments.bed annotation.gtf ref1.fasta ref2.fasta value |
| Test-4 |
alignments: alignments.bed annotation|choice: no reference|ref_fasta1: ref1.fasta reference|ref_fasta2: ref2.fasta reference|ref_type: split chimeric_only: True |
name: value name: value |
alignments.bed ref1.fasta ref2.fasta value |