Repository revision
10:9ef3526640f8

Repository 'chira_merge'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/chira_merge

ChiRA merge tool metadata
Miscellaneous
ChiRA merge
merge aligned positions
chira_merge
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.4+galaxy0
1.3.4+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.4+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.3.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.2.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.1.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.1.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.1.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.0.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.0.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.0.2+galaxy0
chira_merge
Requirements (dependencies defined in the <requirements> tag set)
name version type
chira 1.3.4 package
Functional tests
name inputs outputs required files
Test-1 reference|ref_fasta2: ref2.fasta
annotation|choice: no
reference|ref_fasta1: ref1.fasta
alignments: alignments.bed
reference|ref_type: split
attributes: name
attributes: name
alignments.bed
ref1.fasta
ref2.fasta
name
Test-2 annotation|choice: yes
reference|ref_fasta2: ref2.fasta
reference|ref_fasta1: ref1.fasta
annotation|gtf: annotation.gtf
reference|ref_type: split
alignments: alignments.bed
attributes: name
attributes: name
alignments.bed
annotation.gtf
ref1.fasta
ref2.fasta
name
Test-3 merge|min_cluster_height: 0
annotation|choice: yes
reference|ref_fasta2: ref2.fasta
merge|min_block_height: 1
reference|ref_fasta1: ref1.fasta
annotation|gtf: annotation.gtf
reference|ref_type: split
merge|mode: blockbuster
alignments: alignments.bed
attributes: name
attributes: name
alignments.bed
annotation.gtf
ref1.fasta
ref2.fasta
name
Test-4 annotation|choice: no
reference|ref_fasta2: ref2.fasta
reference|ref_fasta1: ref1.fasta
reference|ref_type: split
chimeric_only: True
alignments: alignments.bed
attributes: name
attributes: name
alignments.bed
ref1.fasta
ref2.fasta
name