Repository revision
1:a62b0c62270e

Repository 'naivestates'
hg clone https://toolshed.g2.bx.psu.edu/repos/perssond/naivestates

naivestates tool metadata
Miscellaneous
naivestates
Inference of cell states using Naive Bayes
naivestates
toolshed.g2.bx.psu.edu/repos/perssond/naivestates/naivestates/1.6.1.3
1.6.1.3
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/perssond/naivestates/naivestates/1.6.1.3 (this tool)
toolshed.g2.bx.psu.edu/repos/perssond/naivestates/naivestates/1.6.1.2
naivestates
Requirements (dependencies defined in the <requirements> tag set)
name version type
naivestates 1.6.1 package
Additional information about this tool
${__tool_directory__}/main.R
        -i '$counts'

        #if $markers
        -m $markers
        #end if
        
        --mct $mct
        -p $plots

        #if $id
        --id $id
        #end if

        --log $log

        #if $sfx
        --sfx $sfx
        #end if

        #if $umap
        --umap
        #end if
        -o .

        &&

        mv *-states.csv states.csv;

        #if $plots != "off"
        mv plots/*-probs.${plots} plots/probs.${plots};
        mv plots/*-summary.${plots} plots/summary.${plots};
        mv plots/*-allfits.${plots} plots/allfits.${plots};
        #end if

    
None
False
Functional tests
No functional tests defined