| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_ramachandran_plot/mdanalysis_ramachandran_plot/1.0.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_ramachandran_plot/mdanalysis_ramachandran_plot/0.20 (this tool) |
| toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_ramachandran_plot/mdanalysis_ramachandran_plot/0.1.3 |
| mdanalysis_ramachandran_plot |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mdanalysis | 0.20.1 | package |
| scipy | 1.3.1 | package |
| seaborn | 0.9.0 | package |
| nbdime | 1.1.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
strin: test.pdb phi|phi_name4: C4 phi|phi_name3: O4 phi|phi_name2: C1 phi|phi_name1: O5 psi|psi_segid1: HET psi|psi_resid4: 2 psi|psi_segid2: HET psi|psi_resid2: 2 psi|psi_segid4: HET psi|psi_resid1: 3 psi|psi_segid3: HET trajin: test.dcd phi|phi_segid3: HET phi|phi_segid2: HET phi|phi_segid4: HET psi|psi_name4: C3 psi|psi_name3: C4 psi|psi_name2: O4 psi|psi_name1: C1 psi|psi_resid3: 2 phi|phi_segid1: HET phi|phi_resid4: 2 phi|phi_resid2: 3 phi|phi_resid3: 2 phi|phi_resid1: 3 |
attributes: name |
test.dcd test.pdb name |
| Test-2 |
strin: test.gro phi|phi_name4: C4 phi|phi_name3: O4 phi|phi_name2: C1 phi|phi_name1: O5 psi|psi_segid1: SYSTEM psi|psi_resid4: 2 psi|psi_segid2: SYSTEM psi|psi_resid2: 2 psi|psi_segid4: SYSTEM psi|psi_resid1: 3 psi|psi_segid3: SYSTEM trajin: test.xtc phi|phi_segid3: SYSTEM phi|phi_segid2: SYSTEM phi|phi_segid4: SYSTEM psi|psi_name4: C3 psi|psi_name3: C4 psi|psi_name2: O4 psi|psi_name1: C1 psi|psi_resid3: 2 phi|phi_segid1: SYSTEM phi|phi_resid4: 2 phi|phi_resid2: 3 phi|phi_resid3: 2 phi|phi_resid1: 3 |
attributes: name |
test.xtc test.gro name |