| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_ramachandran_plot/mdanalysis_ramachandran_plot/1.0.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_ramachandran_plot/mdanalysis_ramachandran_plot/0.20 |
| toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_ramachandran_plot/mdanalysis_ramachandran_plot/0.1.3 |
| mdanalysis_ramachandran_plot |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mdanalysis | 1.0.0 | package |
| scipy | 1.5.2 | package |
| seaborn | 0.10.0 | package |
| nbdime | 2.0.0 | package |
| pyyaml | 5.3.1 | package |
| Additional information about this tool |
python '$__tool_directory__/ramachandran_plots.py'
--itraj '$trajin'
--istr '$strin'
--itrajext '$trajin.ext'
--istrext '$strin.ext'
--iyml '$ymlin'
--output '$output'
--oramachandran_plot '$ramachandran_plot'
2>&1
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
trajin: test.dcd strin: test.pdb ymlparam|ymlin: test.yml |
name: value name: value |
test.dcd test.pdb test.yml value |