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Repository revision

Revision: 1:3556001ff2db

Repository 'variant_analyzer'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer

DCS mutations to tags/reads: tool metadata

Miscellaneous

Name: DCS mutations to tags/reads:

Description: Extracts all tags that carry a mutation in the duplex consensus sequence (DCS)

Id: mut2read

Guid: toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer/mut2read/1.0.1

Version: 1.0.1

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer/mut2read/2.0.0

toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer/mut2read/1.0.1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer/mut2read/1.0.0

mut2read

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

matplotlib

3.1.2

package

pysam

0.15

package

Functional tests

name

inputs

outputs

required files

Test-1

file3: Aligned_Families_test_data_VA.tabular
file2: DCS_test_data_VA.bam
file1: DCS_Mutations_test_data_VA.tabular

attributes: name
attributes: name

DCS_Mutations_test_data_VA.tabular
DCS_test_data_VA.bam
Aligned_Families_test_data_VA.tabular
name