Revision: 1:3556001ff2db

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer

Miscellaneous

Name: DCS mutations to SSCS stats:

Description: Extracts all tags from the single stranded consensus sequence (SSCS) bam file that carry a mutation at the same position a mutation is called in the duplex consensus sequence (DCS) and calculates their frequencies

Id: mut2sscs

Guid: toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer/mut2sscs/1.0.1

Version: 1.0.1

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer/mut2sscs/1.0.1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer/mut2sscs/1.0.0

mut2sscs

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
matplotlib	3.1.2	package
pysam	0.15	package

Functional tests

name	inputs	outputs	required files
Test-1	file2: SSCS_test_data_VA.bam file1: DCS_Mutations_test_data_VA.tabular	attributes: name	DCS_Mutations_test_data_VA.tabular SSCS_test_data_VA.bam name