Galaxy |

Repository revision

Revision: 5:f5a5a2b39ff2

Repository 'last'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/last

LAST-train tool metadata

Miscellaneous

Name: LAST-train

Description: finds the rates (probabilities) of insertion, deletion, and substitutions between two sets of sequences.

Id: last_train

Guid: toolshed.g2.bx.psu.edu/repos/iuc/last/last_train/1205+galaxy0

Version: 1205+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/last/last_train/1205+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/last/last_train/1205+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/last/last_train/1021+galaxy2

toolshed.g2.bx.psu.edu/repos/iuc/last/last_train/1021+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/last/last_train/1021+galaxy0

last_train

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

last

1205

package

Functional tests

name

inputs

outputs

required files

Test-1

db_opts|database: humdb
db_opts|db_opts_input: db
query_fasta: fuguMito.fa.gz
last_train_opt|align_opt|E: 10

name: value

fuguMito.fa.gz
value

Test-2

db_opts|database: humdb
db_opts|db_opts_input: db
query_fasta: fuguMito.fq.gz

name: value

fuguMito.fq.gz
value