Repository revision
3:c5d7050e4ad7

Repository 'stacks2_shortreads'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads

Stacks2: process shortreads tool metadata
Miscellaneous
fast cleaning of randomly sheared genomic or transcriptomic data
stacks2_shortreads
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.55+galaxy0
2.55+galaxy0
process_radtags -h |& grep process_radtags | head -n 1 | cut -d" " -f 2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.55+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.55+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.53+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.4+galaxy0
stacks2_shortreads
Requirements (dependencies defined in the <requirements> tag set)
name version type
stacks 2.55 package
python 3.7 package
findutils 4.6.0 package
Functional tests
name inputs outputs required files
Test-1 input_type|fqinputs: procrad/R1.fq
input_type|barcode_encoding: --inline_null
input_type|input_type_select: single
barcode: procrad/barcodes
name: value
procrad/R1.fq
procrad/barcodes
value
Test-2 input_type|fqinputs: list:paired collection
input_type|barcode_encoding: --inline_null
input_type|input_type_select: paired
barcode: procrad/barcodes
options_advanced|no_read_trimming: True
options_advanced|mate_pair: True
options_advanced|no_overhang: True
capture: True
outype: gzfastq
name: value
procrad/R1.fq
procrad/R2.fq
procrad/barcodes
value