Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.55+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.55+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.53+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.4+galaxy0 |
stacks2_shortreads |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
stacks | 2.55 | package |
python | 3.7 | package |
findutils | 4.6.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_type|fqinputs: procrad/R1.fq input_type|barcode_encoding: --inline_null input_type|input_type_select: single barcode: procrad/barcodes |
name: value |
procrad/R1.fq procrad/barcodes value |
Test-2 |
input_type|fqinputs: list:paired collection input_type|barcode_encoding: --inline_null input_type|input_type_select: paired barcode: procrad/barcodes options_advanced|no_read_trimming: True options_advanced|mate_pair: True options_advanced|no_overhang: True capture: True outype: gzfastq |
name: value |
procrad/R1.fq procrad/R2.fq procrad/barcodes value |