| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/fastq_quality_trimmer/1.1.5 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/fastq_quality_trimmer/1.1.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/fastq_quality_trimmer/1.0.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/fastq_quality_trimmer/1.0.0 |
| fastq_quality_trimmer |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| galaxy_sequence_utils | 1.1.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
score_comparison: >= window_size: 1 trim_ends: 53 input_file: sanger_full_range_original_sanger.fastqsanger aggregation_action: min quality_score: 20 step_size: 1 keep_zero_length: False exclude_count: 0 |
attributes: name |
sanger_full_range_original_sanger.fastqsanger name |
| Test-2 |
score_comparison: >= window_size: 1 trim_ends: 5 input_file: sanger_full_range_original_sanger.fastqsanger aggregation_action: min quality_score: 20 step_size: 1 keep_zero_length: False exclude_count: 0 |
attributes: name |
sanger_full_range_original_sanger.fastqsanger name |
| Test-3 |
score_comparison: >= window_size: 1 trim_ends: 3 input_file: sanger_full_range_original_sanger.fastqsanger aggregation_action: min quality_score: 20 step_size: 1 keep_zero_length: False exclude_count: 0 |
attributes: name |
sanger_full_range_original_sanger.fastqsanger name |
| Test-4 |
score_comparison: >= window_size: 2 trim_ends: 53 input_file: sanger_full_range_original_sanger.fastqsanger aggregation_action: min quality_score: 1 step_size: 1 keep_zero_length: False exclude_count: 1 |
attributes: name |
sanger_full_range_original_sanger.fastqsanger name |
| Test-5 |
score_comparison: >= window_size: 1 trim_ends: 53 input_file: sanger_full_range_original_sanger.fastqsanger aggregation_action: min quality_score: 999 step_size: 1 keep_zero_length: True exclude_count: 0 |
attributes: name |
sanger_full_range_original_sanger.fastqsanger name |
| Test-6 |
score_comparison: >= window_size: 1 trim_ends: 53 input_file: sanger_full_range_original_sanger.fastqsanger aggregation_action: min quality_score: 999 step_size: 1 keep_zero_length: False exclude_count: 0 |
attributes: name |
sanger_full_range_original_sanger.fastqsanger name |