| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.6 |
| toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.5 (this tool) |
| toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.4 |
| toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.3 |
| toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.2 |
| toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.1 |
| toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.0 |
| toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.0.1 |
| sample_seqs |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| biopython | 1.67 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
sampling|type: everyNth sampling|every_n: 100 input_file: get_orf_input.Suis_ORF.prot.fasta |
output_file: get_orf_input.Suis_ORF.prot.sample_N100.fasta |
get_orf_input.Suis_ORF.prot.fasta get_orf_input.Suis_ORF.prot.sample_N100.fasta |
| Test-2 |
sampling|type: everyNth sampling|every_n: 100 input_file: ecoli.fastq |
output_file: ecoli.sample_N100.fastq |
ecoli.fastq ecoli.sample_N100.fastq |
| Test-3 |
sampling|type: everyNth sampling|every_n: 100 interleaved: True input_file: ecoli.fastq |
output_file: ecoli.pair_sample_N100.fastq |
ecoli.fastq ecoli.pair_sample_N100.fastq |
| Test-4 |
sampling|type: everyNth sampling|every_n: 5 input_file: MID4_GLZRM4E04_rnd30_frclip.sff |
output_file: MID4_GLZRM4E04_rnd30_frclip.sample_N5.sff |
MID4_GLZRM4E04_rnd30_frclip.sff MID4_GLZRM4E04_rnd30_frclip.sample_N5.sff |
| Test-5 |
sampling|percent: 1.0 sampling|type: percentage input_file: get_orf_input.Suis_ORF.prot.fasta |
output_file: get_orf_input.Suis_ORF.prot.sample_N100.fasta |
get_orf_input.Suis_ORF.prot.fasta get_orf_input.Suis_ORF.prot.sample_N100.fasta |
| Test-6 |
sampling|type: everyNth sampling|every_n: 100 interleaved: True input_file: get_orf_input.Suis_ORF.prot.fasta |
output_file: get_orf_input.Suis_ORF.prot.pair_sample_N100.fasta |
get_orf_input.Suis_ORF.prot.fasta get_orf_input.Suis_ORF.prot.pair_sample_N100.fasta |
| Test-7 |
sampling|count: 2910 sampling|type: desired_count input_file: get_orf_input.Suis_ORF.prot.fasta |
output_file: get_orf_input.Suis_ORF.prot.fasta |
get_orf_input.Suis_ORF.prot.fasta |
| Test-8 |
sampling|count: 10 sampling|type: desired_count interleaved: True input_file: get_orf_input.Suis_ORF.prot.fasta |
output_file: get_orf_input.Suis_ORF.prot.pair_sample_C10.fasta |
get_orf_input.Suis_ORF.prot.fasta get_orf_input.Suis_ORF.prot.pair_sample_C10.fasta |
| Test-9 |
sampling|percent: 1.0 sampling|type: percentage input_file: ecoli.fastq |
output_file: ecoli.sample_N100.fastq |
ecoli.fastq ecoli.sample_N100.fastq |
| Test-10 |
sampling|count: 10 sampling|type: desired_count input_file: ecoli.fastq |
output_file: ecoli.sample_C10.fastq |
ecoli.fastq ecoli.sample_C10.fastq |
| Test-11 |
sampling|count: 10 sampling|type: desired_count input_file: ecoli.sample_C10.fastq |
output_file: ecoli.sample_C10.fastq |
ecoli.sample_C10.fastq |
| Test-12 |
sampling|percent: 20.0 sampling|type: percentage input_file: MID4_GLZRM4E04_rnd30_frclip.sff |
output_file: MID4_GLZRM4E04_rnd30_frclip.sample_N5.sff |
MID4_GLZRM4E04_rnd30_frclip.sff MID4_GLZRM4E04_rnd30_frclip.sample_N5.sff |
| Test-13 |
sampling|type: everyNth sampling|every_n: 5 interleaved: True input_file: MID4_GLZRM4E04_rnd30_frclip.sff |
output_file: MID4_GLZRM4E04_rnd30_frclip.pair_sample_N5.sff |
MID4_GLZRM4E04_rnd30_frclip.sff MID4_GLZRM4E04_rnd30_frclip.pair_sample_N5.sff |
| Test-14 |
sampling|count: 25 sampling|type: desired_count input_file: MID4_GLZRM4E04_rnd30_frclip.sff |
output_file: MID4_GLZRM4E04_rnd30_frclip.sff |
MID4_GLZRM4E04_rnd30_frclip.sff |
| Test-15 |
sampling|count: 1 sampling|type: desired_count input_file: MID4_GLZRM4E04_rnd30_frclip.sff |
output_file: MID4_GLZRM4E04_rnd30_frclip.sample_C1.sff |
MID4_GLZRM4E04_rnd30_frclip.sff MID4_GLZRM4E04_rnd30_frclip.sample_C1.sff |
| Test-16 |
sampling|count: 30 sampling|type: desired_count input_file: MID4_GLZRM4E04_rnd30_frclip.sff |
MID4_GLZRM4E04_rnd30_frclip.sff |