Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.4+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.1+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.1+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.0.0+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/4.1.4 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/4.1.2 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2 |
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/2.0 |
busco |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
busco | 5.3.2 | package |
tar | 1.34 | package |
fonts-conda-ecosystem | 1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input: genome.fa busco_mode|use_augustus|use_augustus_selector: yes busco_mode|mode: geno lineage|lineage_dataset: arthropoda_odb10 lineage|lineage_mode: select_lineage outputs: ['short_summary', 'missing'] |
name: value name: value name: value |
genome.fa value |
Test-2 |
input: proteome.fa busco_mode|mode: prot lineage|lineage_dataset: arthropoda_odb10 lineage|lineage_mode: select_lineage outputs: ['short_summary', 'missing', 'image'] |
name: value name: value name: value name: value |
proteome.fa value |
Test-3 |
input: transcriptome.fa busco_mode|mode: tran lineage|lineage_dataset: arthropoda_odb10 lineage|lineage_mode: select_lineage outputs: ['short_summary', 'missing', 'image'] |
name: value name: value name: value name: value |
transcriptome.fa value |
Test-4 |
input: genome.fa busco_mode|use_augustus|aug_prediction|augustus_species: human busco_mode|use_augustus|aug_prediction|augustus_mode: builtin busco_mode|use_augustus|use_augustus_selector: yes busco_mode|mode: geno lineage|lineage_dataset: arthropoda_odb10 lineage|lineage_mode: select_lineage outputs: short_summary |
name: value name: value |
genome.fa value |
Test-5 |
input: genome.fa busco_mode|use_augustus|aug_prediction|augustus_model: local.tar.gz busco_mode|use_augustus|aug_prediction|augustus_mode: history busco_mode|use_augustus|use_augustus_selector: yes busco_mode|mode: geno lineage|lineage_dataset: arthropoda_odb10 lineage|lineage_mode: select_lineage outputs: ['short_summary', 'missing'] |
name: value name: value name: value |
genome.fa local.tar.gz value |
Test-6 |
input: genome.fa busco_mode|use_augustus|use_augustus_selector: no busco_mode|mode: geno lineage|lineage_dataset: arthropoda_odb10 lineage|lineage_mode: select_lineage outputs: ['short_summary', 'missing', 'image'] |
name: value name: value name: value name: value |
genome.fa value |
Test-7 |
input: genome.fa busco_mode|use_augustus|use_augustus_selector: no busco_mode|mode: geno lineage|auto_lineage: --auto-lineage lineage|lineage_mode: auto_detect outputs: ['short_summary', 'missing', 'image'] |
name: value name: value name: value name: value |
genome.fa value |