Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.22.0.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.6 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.5 |
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.4 |
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.3 |
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.2 |
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.1 |
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.0 |
maldi_quant_peak_detection |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
r-base | 3.5.1 | package |
bioconductor-cardinal | 1.12.1 | package |
r-maldiquantforeign | 0.11.5 | package |
r-maldiquant | 1.18 | package |
r-ggplot2 | 3.0 | package |
r-gridextra | 2.3 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
methods_0|methods_conditional|use_annotations: True tabular_annotation|column_y: 2 tabular_annotation|column_x: 1 methods_0|methods_conditional|peak_method: SuperSmoother tabular_annotation|load_annotation: yes_annotation tabular_annotation|annotation_file: pixel_annotations.tabular methods_0|methods_conditional|halfWindowSize: 1 methods_0|methods_conditional|method: Peak_detection tabular_annotation|column_names: 3 tabular_annotation|tabular_header: True methods_0|methods_conditional|snr: 5 infile: |
attributes: name attributes: name attributes: name |
pixel_annotations.tabular name |
Test-2 |
methods_0|methods_conditional|method: monoisotopic_peaks centroids: True infile: masspeaks3_forinput.tabular methods_0|methods_conditional|tolerance: 0.0004 methods_0|methods_conditional|size: 3 |
attributes: name attributes: name attributes: name attributes: name |
masspeaks3_forinput.tabular name |
Test-3 |
methods_2|methods_conditional|filter_annot_groups: True tabular_annotation|column_y: 2 tabular_annotation|column_x: 1 tabular_annotation|tabular_header: True methods_0|methods_conditional|peak_method: MAD tabular_annotation|load_annotation: yes_annotation methods_1|methods_conditional|method: Binning tabular_annotation|annotation_file: pixel_annotations.tabular methods_0|methods_conditional|halfWindowSize: 1 methods_2|methods_conditional|method: Filtering methods_2|methods_conditional|minFrequency: 0.5 methods_0|methods_conditional|method: Peak_detection methods_2|methods_conditional|minNumber: 3 tabular_annotation|column_names: 3 methods_2|methods_conditional|mergeWhitelists: False methods_0|methods_conditional|snr: 2 infile: methods_1|methods_conditional|bin_tolerance: 0.01 |
attributes: name attributes: name attributes: name attributes: name |
pixel_annotations.tabular name |
Test-4 |
methods_0|methods_conditional|halfWindowSize: 20 methods_0|methods_conditional|peak_method: MAD methods_0|methods_conditional|method: Peak_detection infile: testfile_squares.rdata methods_0|methods_conditional|snr: 2 |
attributes: name attributes: name attributes: name attributes: name |
testfile_squares.rdata name |