Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.8+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.6+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.3.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.2.0.1 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.2.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.1.0 |
XTandemAdapter |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
openms | 2.6 | package |
openms-thirdparty | 2.6 | package |
blast | 2.9.0 | package |
ctdopts | 1.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
in: spectra.mzML database: proteins.fasta default_config_file: CHEMISTRY/XTandem_default_input.xml ignore_adapter_param: False precursor_mass_tolerance: 5.0 fragment_mass_tolerance: 0.3 precursor_error_units: ppm fragment_error_units: Da max_precursor_charge: 0 no_isotope_error: False fixed_modifications: variable_modifications: Oxidation (M) minimum_fragment_mz: 150.0 enzyme: Trypsin missed_cleavages: 1 semi_cleavage: False output_results: all max_valid_expect: 0.1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
spectra.mzML proteins.fasta CHEMISTRY/XTandem_default_input.xml value |
Test-2 |
in: spectra.mzML database: proteins.fasta default_config_file: CHEMISTRY/XTandem_default_input.xml ignore_adapter_param: False precursor_mass_tolerance: 5.0 fragment_mass_tolerance: 0.3 precursor_error_units: ppm fragment_error_units: Da max_precursor_charge: 0 no_isotope_error: False fixed_modifications: variable_modifications: Oxidation (M) minimum_fragment_mz: 150.0 enzyme: Trypsin missed_cleavages: 1 semi_cleavage: False output_results: valid max_valid_expect: 1e-14 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
spectra.mzML proteins.fasta CHEMISTRY/XTandem_default_input.xml value |
Test-3 |
in: spectra.mzML database: proteinslong.fasta default_config_file: CHEMISTRY/XTandem_default_input.xml ignore_adapter_param: False precursor_mass_tolerance: 5.0 fragment_mass_tolerance: 0.3 precursor_error_units: ppm fragment_error_units: Da max_precursor_charge: 0 no_isotope_error: False fixed_modifications: variable_modifications: Oxidation (M) minimum_fragment_mz: 150.0 enzyme: Trypsin missed_cleavages: 1 semi_cleavage: False output_results: all max_valid_expect: 0.1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value name: value |
spectra.mzML proteinslong.fasta CHEMISTRY/XTandem_default_input.xml value |