Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_isobaricanalyzer/IsobaricAnalyzer/2.8+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_isobaricanalyzer/IsobaricAnalyzer/2.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_isobaricanalyzer/IsobaricAnalyzer/2.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_isobaricanalyzer/IsobaricAnalyzer/2.3.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_isobaricanalyzer/IsobaricAnalyzer/2.2.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_isobaricanalyzer/IsobaricAnalyzer/2.1.0 |
IsobaricAnalyzer |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
openms | 2.8 | package |
openms-thirdparty | 2.8 | package |
omssa | 2.1.9 | package |
blast | 2.13.0 | package |
ctdopts | 1.4 | package |
Additional information about this tool |
#def quote(s): #set $s = [ _ for _ in $s.split(" ") if _ != "" ] #set $q = False #for $i, $p in enumerate($s): #if $p == "": #continue #end if #if $p.startswith('"'): #set $q = True #end if ## #if p.startswith('-'): ## #set p = "\\" + p ## #elif p.startswith('"-'): ## #set p = "\\" + p[1:] ## #end if #if not $q: #set $s[i] = '"%s"' % p #end if #if $p.endswith('"'): #set $q = False #end if #end for #return " ".join($s) #end def #def oms2gxyext(o) #set m={'txt': 'txt', 'tsv': 'tabular', 'bioml': 'xml', 'consensusXML': 'consensusxml', 'csv': 'csv', 'dta': 'dta', 'dta2d': 'dta2d', 'edta': 'edta', 'fa': 'fasta', 'fas': 'fasta', 'fasta': 'fasta', 'FASTA': 'fasta', 'featureXML': 'featurexml', 'featurexml': 'featurexml', 'html': 'html', 'HTML': 'html', 'idXML': 'idxml', 'json': 'json', 'kroenik': 'kroenik', 'mascotXML': 'mascotxml', 'mgf': 'mgf', 'mrm': 'mrm', 'ms': 'sirius.ms', 'ms2': 'ms2', 'msp': 'msp', 'mzData': 'mzdata', 'mzid': 'mzid', 'mzML': 'mzml', 'mzml': 'mzml', 'mzq': 'mzq', 'mzQC': 'mzqc', 'mzTab': 'mztab', 'mzXML': 'mzxml', 'novor': 'txt', 'obo': 'obo', 'oms': 'sqlite', 'omssaXML': 'idxml', 'osw': 'osw', 'OSW': 'osw', 'params': 'txt', 'paramXML': 'paramxml', 'peplist': 'peplist', 'pep.xml': 'pepxml', 'pepXML': 'pepxml', 'png': 'png', 'PNG': 'png', 'protXML': 'protxml', 'psms': 'psms', 'pqp': 'pqp', 'qcML': 'qcml', 'spec.xml': 'spec.xml', 'splib': 'splib', 'sqMass': 'sqmass', 'tandem.xml': 'tandem', 'trafoXML': 'trafoxml', 'traML': 'traml', 'TraML': 'traml', 'tab': 'tabular', 'raw': 'thermo.raw', 'xls': 'tsv', 'XML': 'xml', 'xml': 'xml', 'xquest.xml': 'xquest.xml', 'xsd': 'xml'} #return m[o] #end def #def gxy2omsext(g) #set m={'txt': 'txt', 'tabular': 'tsv', 'xml': 'bioml', 'consensusxml': 'consensusXML', 'csv': 'csv', 'dta': 'dta', 'dta2d': 'dta2d', 'edta': 'edta', 'fasta': 'fa', 'featurexml': 'featureXML', 'html': 'html', 'idxml': 'idXML', 'json': 'json', 'kroenik': 'kroenik', 'mascotxml': 'mascotXML', 'mgf': 'mgf', 'mrm': 'mrm', 'sirius.ms': 'ms', 'ms2': 'ms2', 'msp': 'msp', 'mzdata': 'mzData', 'mzid': 'mzid', 'mzml': 'mzML', 'mzq': 'mzq', 'mzqc': 'mzQC', 'mztab': 'mzTab', 'mzxml': 'mzXML', 'obo': 'obo', 'sqlite': 'oms', 'osw': 'osw', 'paramxml': 'paramXML', 'peff': 'fasta', 'peplist': 'peplist', 'pepxml': 'pep.xml', 'png': 'png', 'protxml': 'protXML', 'psms': 'psms', 'pqp': 'pqp', 'qcml': 'qcML', 'spec.xml': 'spec.xml', 'splib': 'splib', 'sqmass': 'sqMass', 'tandem': 'tandem.xml', 'trafoxml': 'trafoXML', 'traml': 'traML', 'thermo.raw': 'raw', 'tsv': 'xls', 'xquest.xml': 'xquest.xml'} #return m[g] #end def #import re ## Preprocessing mkdir in && ln -s '$in' 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' && mkdir out && ## Main program call set -o pipefail && IsobaricAnalyzer -write_ctd ./ && python3 '$__tool_directory__/fill_ctd.py' 'IsobaricAnalyzer.ctd' '$args_json' '$hardcoded_json' && IsobaricAnalyzer -ini IsobaricAnalyzer.ctd -in 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' -out 'out/output.${gxy2omsext("consensusxml")}' ## Postprocessing && mv 'out/output.${gxy2omsext("consensusxml")}' '$out' #if "ctd_out_FLAG" in $OPTIONAL_OUTPUTS && mv 'IsobaricAnalyzer.ctd' '$ctd_out' #end if
Functional tests |
name | inputs | outputs | required files |
Test-1 |
type: itraq4plex in: IsobaricAnalyzer_input_1.mzML extraction|select_activation: None extraction|reporter_mass_shift: 0.1 extraction|min_precursor_intensity: 1.0 extraction|keep_unannotated_precursor: True extraction|min_reporter_intensity: 0.0 extraction|discard_low_intensity_quantifications: False extraction|min_precursor_purity: 0.0 extraction|precursor_isotope_deviation: 10.0 extraction|purity_interpolation: True itraq4plex|channel_114_description: l1 itraq4plex|channel_115_description: l2 itraq4plex|channel_116_description: l3 itraq4plex|channel_117_description: lung itraq4plex|reference_channel: 114 itraq4plex|correction_matrix: "0.0/1.0/5.9/0.2" "0.0/2.0/5.6/0.1" "0.0/3.0/4.5/0.1" "0.1/4.0/3.5/0.1" itraq8plex|channel_113_description: itraq8plex|channel_114_description: itraq8plex|channel_115_description: itraq8plex|channel_116_description: itraq8plex|channel_117_description: itraq8plex|channel_118_description: itraq8plex|channel_119_description: itraq8plex|channel_121_description: itraq8plex|reference_channel: 113 itraq8plex|correction_matrix: "0.00/0.00/6.89/0.22" "0.00/0.94/5.90/0.16" "0.00/1.88/4.90/0.10" "0.00/2.82/3.90/0.07" "0.06/3.77/2.99/0.00" "0.09/4.71/1.88/0.00" "0.14/5.66/0.87/0.00" "0.27/7.44/0.18/0.00" quantification|isotope_correction: True quantification|normalization: False tmt10plex|channel_126_description: tmt10plex|channel_127N_description: tmt10plex|channel_127C_description: tmt10plex|channel_128N_description: tmt10plex|channel_128C_description: tmt10plex|channel_129N_description: tmt10plex|channel_129C_description: tmt10plex|channel_130N_description: tmt10plex|channel_130C_description: tmt10plex|channel_131_description: tmt10plex|reference_channel: 126 tmt10plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" tmt11plex|channel_126_description: tmt11plex|channel_127N_description: tmt11plex|channel_127C_description: tmt11plex|channel_128N_description: tmt11plex|channel_128C_description: tmt11plex|channel_129N_description: tmt11plex|channel_129C_description: tmt11plex|channel_130N_description: tmt11plex|channel_130C_description: tmt11plex|channel_131N_description: tmt11plex|channel_131C_description: tmt11plex|reference_channel: 126 tmt11plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" tmt16plex|channel_126_description: tmt16plex|channel_127N_description: tmt16plex|channel_127C_description: tmt16plex|channel_128N_description: tmt16plex|channel_128C_description: tmt16plex|channel_129N_description: tmt16plex|channel_129C_description: tmt16plex|channel_130N_description: tmt16plex|channel_130C_description: tmt16plex|channel_131N_description: tmt16plex|channel_131C_description: tmt16plex|channel_132N_description: tmt16plex|channel_132C_description: tmt16plex|channel_133N_description: tmt16plex|channel_133C_description: tmt16plex|channel_134N_description: tmt16plex|reference_channel: 126 tmt16plex|correction_matrix: "0.0/0.0/8.02/0.0" "0.0/0.68/7.46/0.0" "0.0/0.71/6.94/0.0" "0.0/1.88/6.67/0.0" "0.0/1.34/5.59/0.0" "0.0/2.41/5.48/0.0" "0.0/2.34/5.19/0.0" "0.0/3.53/4.57/0.0" "0.0/2.67/4.16/0.0" "0.0/3.92/3.73/0.0" "0.0/3.69/3.14/0.0" "0.0/3.22/2.76/0.0" "0.0/4.11/2.0/0.0" "0.0/3.85/1.58/0.0" "0.0/4.63/1.18/0.0" "0.0/5.22/0.86/0.0" tmt6plex|channel_126_description: tmt6plex|channel_127_description: tmt6plex|channel_128_description: tmt6plex|channel_129_description: tmt6plex|channel_130_description: tmt6plex|channel_131_description: tmt6plex|reference_channel: 126 tmt6plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IsobaricAnalyzer_input_1.mzML value |
Test-2 |
type: itraq4plex in: TMTTenPlexMethod_test.mzML extraction|select_activation: auto extraction|reporter_mass_shift: 0.002 extraction|min_precursor_intensity: 1.0 extraction|keep_unannotated_precursor: True extraction|min_reporter_intensity: 0.0 extraction|discard_low_intensity_quantifications: False extraction|min_precursor_purity: 0.0 extraction|precursor_isotope_deviation: 10.0 extraction|purity_interpolation: True itraq4plex|channel_114_description: itraq4plex|channel_115_description: itraq4plex|channel_116_description: itraq4plex|channel_117_description: itraq4plex|reference_channel: 114 itraq4plex|correction_matrix: "0.0/1.0/5.9/0.2" "0.0/2.0/5.6/0.1" "0.0/3.0/4.5/0.1" "0.1/4.0/3.5/0.1" itraq8plex|channel_113_description: itraq8plex|channel_114_description: itraq8plex|channel_115_description: itraq8plex|channel_116_description: itraq8plex|channel_117_description: itraq8plex|channel_118_description: itraq8plex|channel_119_description: itraq8plex|channel_121_description: itraq8plex|reference_channel: 113 itraq8plex|correction_matrix: "0.00/0.00/6.89/0.22" "0.00/0.94/5.90/0.16" "0.00/1.88/4.90/0.10" "0.00/2.82/3.90/0.07" "0.06/3.77/2.99/0.00" "0.09/4.71/1.88/0.00" "0.14/5.66/0.87/0.00" "0.27/7.44/0.18/0.00" quantification|isotope_correction: True quantification|normalization: False tmt10plex|channel_126_description: tmt10plex|channel_127N_description: tmt10plex|channel_127C_description: tmt10plex|channel_128N_description: tmt10plex|channel_128C_description: tmt10plex|channel_129N_description: tmt10plex|channel_129C_description: tmt10plex|channel_130N_description: tmt10plex|channel_130C_description: tmt10plex|channel_131_description: tmt10plex|reference_channel: 126 tmt10plex|correction_matrix: "0.0/0.0/5.0/0.0" "0.0/0.2/4.6/0.0" "0.0/0.2/4.6/0.3" "0.0/0.9/4.7/0.2" "0.0/0.5/3.2/0.0" "0.0/0.7/3.3/0.0" "0.0/1.3/2.5/0.0" "0.0/1.2/2.8/2.7" "0.0/1.5/2.0/0.0" "0.0/1.5/1.9/0.0" tmt11plex|channel_126_description: tmt11plex|channel_127N_description: tmt11plex|channel_127C_description: tmt11plex|channel_128N_description: tmt11plex|channel_128C_description: tmt11plex|channel_129N_description: tmt11plex|channel_129C_description: tmt11plex|channel_130N_description: tmt11plex|channel_130C_description: tmt11plex|channel_131N_description: tmt11plex|channel_131C_description: tmt11plex|reference_channel: 126 tmt11plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" tmt16plex|channel_126_description: tmt16plex|channel_127N_description: tmt16plex|channel_127C_description: tmt16plex|channel_128N_description: tmt16plex|channel_128C_description: tmt16plex|channel_129N_description: tmt16plex|channel_129C_description: tmt16plex|channel_130N_description: tmt16plex|channel_130C_description: tmt16plex|channel_131N_description: tmt16plex|channel_131C_description: tmt16plex|channel_132N_description: tmt16plex|channel_132C_description: tmt16plex|channel_133N_description: tmt16plex|channel_133C_description: tmt16plex|channel_134N_description: tmt16plex|reference_channel: 126 tmt16plex|correction_matrix: "0.0/0.0/8.02/0.0" "0.0/0.68/7.46/0.0" "0.0/0.71/6.94/0.0" "0.0/1.88/6.67/0.0" "0.0/1.34/5.59/0.0" "0.0/2.41/5.48/0.0" "0.0/2.34/5.19/0.0" "0.0/3.53/4.57/0.0" "0.0/2.67/4.16/0.0" "0.0/3.92/3.73/0.0" "0.0/3.69/3.14/0.0" "0.0/3.22/2.76/0.0" "0.0/4.11/2.0/0.0" "0.0/3.85/1.58/0.0" "0.0/4.63/1.18/0.0" "0.0/5.22/0.86/0.0" tmt6plex|channel_126_description: tmt6plex|channel_127_description: tmt6plex|channel_128_description: tmt6plex|channel_129_description: tmt6plex|channel_130_description: tmt6plex|channel_131_description: tmt6plex|reference_channel: 126 tmt6plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TMTTenPlexMethod_test.mzML value |
Test-3 |
type: itraq4plex in: TMTTenPlexMethod_test.mzML extraction|select_activation: auto extraction|reporter_mass_shift: 0.002 extraction|min_precursor_intensity: 1.0 extraction|keep_unannotated_precursor: True extraction|min_reporter_intensity: 0.0 extraction|discard_low_intensity_quantifications: False extraction|min_precursor_purity: 0.0 extraction|precursor_isotope_deviation: 10.0 extraction|purity_interpolation: True itraq4plex|channel_114_description: itraq4plex|channel_115_description: itraq4plex|channel_116_description: itraq4plex|channel_117_description: itraq4plex|reference_channel: 114 itraq4plex|correction_matrix: "0.0/1.0/5.9/0.2" "0.0/2.0/5.6/0.1" "0.0/3.0/4.5/0.1" "0.1/4.0/3.5/0.1" itraq8plex|channel_113_description: itraq8plex|channel_114_description: itraq8plex|channel_115_description: itraq8plex|channel_116_description: itraq8plex|channel_117_description: itraq8plex|channel_118_description: itraq8plex|channel_119_description: itraq8plex|channel_121_description: itraq8plex|reference_channel: 113 itraq8plex|correction_matrix: "0.00/0.00/6.89/0.22" "0.00/0.94/5.90/0.16" "0.00/1.88/4.90/0.10" "0.00/2.82/3.90/0.07" "0.06/3.77/2.99/0.00" "0.09/4.71/1.88/0.00" "0.14/5.66/0.87/0.00" "0.27/7.44/0.18/0.00" quantification|isotope_correction: True quantification|normalization: False tmt10plex|channel_126_description: tmt10plex|channel_127N_description: tmt10plex|channel_127C_description: tmt10plex|channel_128N_description: tmt10plex|channel_128C_description: tmt10plex|channel_129N_description: tmt10plex|channel_129C_description: tmt10plex|channel_130N_description: tmt10plex|channel_130C_description: tmt10plex|channel_131_description: tmt10plex|reference_channel: 126 tmt10plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" tmt11plex|channel_126_description: tmt11plex|channel_127N_description: tmt11plex|channel_127C_description: tmt11plex|channel_128N_description: tmt11plex|channel_128C_description: tmt11plex|channel_129N_description: tmt11plex|channel_129C_description: tmt11plex|channel_130N_description: tmt11plex|channel_130C_description: tmt11plex|channel_131N_description: tmt11plex|channel_131C_description: tmt11plex|reference_channel: 126 tmt11plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" tmt16plex|channel_126_description: tmt16plex|channel_127N_description: tmt16plex|channel_127C_description: tmt16plex|channel_128N_description: tmt16plex|channel_128C_description: tmt16plex|channel_129N_description: tmt16plex|channel_129C_description: tmt16plex|channel_130N_description: tmt16plex|channel_130C_description: tmt16plex|channel_131N_description: tmt16plex|channel_131C_description: tmt16plex|channel_132N_description: tmt16plex|channel_132C_description: tmt16plex|channel_133N_description: tmt16plex|channel_133C_description: tmt16plex|channel_134N_description: tmt16plex|reference_channel: 126 tmt16plex|correction_matrix: "0.0/0.0/8.02/0.0" "0.0/0.68/7.46/0.0" "0.0/0.71/6.94/0.0" "0.0/1.88/6.67/0.0" "0.0/1.34/5.59/0.0" "0.0/2.41/5.48/0.0" "0.0/2.34/5.19/0.0" "0.0/3.53/4.57/0.0" "0.0/2.67/4.16/0.0" "0.0/3.92/3.73/0.0" "0.0/3.69/3.14/0.0" "0.0/3.22/2.76/0.0" "0.0/4.11/2.0/0.0" "0.0/3.85/1.58/0.0" "0.0/4.63/1.18/0.0" "0.0/5.22/0.86/0.0" tmt6plex|channel_126_description: tmt6plex|channel_127_description: tmt6plex|channel_128_description: tmt6plex|channel_129_description: tmt6plex|channel_130_description: tmt6plex|channel_131_description: tmt6plex|reference_channel: 126 tmt6plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TMTTenPlexMethod_test.mzML value |
Test-4 |
type: tmt10plex in: MS3_nonHierarchical.mzML extraction|select_activation: Collision-induced dissociation extraction|reporter_mass_shift: 0.002 extraction|min_precursor_intensity: 1.0 extraction|keep_unannotated_precursor: True extraction|min_reporter_intensity: 0.0 extraction|discard_low_intensity_quantifications: False extraction|min_precursor_purity: 0.0 extraction|precursor_isotope_deviation: 10.0 extraction|purity_interpolation: True itraq4plex|channel_114_description: itraq4plex|channel_115_description: itraq4plex|channel_116_description: itraq4plex|channel_117_description: itraq4plex|reference_channel: 114 itraq4plex|correction_matrix: "0.0/1.0/5.9/0.2" "0.0/2.0/5.6/0.1" "0.0/3.0/4.5/0.1" "0.1/4.0/3.5/0.1" itraq8plex|channel_113_description: itraq8plex|channel_114_description: itraq8plex|channel_115_description: itraq8plex|channel_116_description: itraq8plex|channel_117_description: itraq8plex|channel_118_description: itraq8plex|channel_119_description: itraq8plex|channel_121_description: itraq8plex|reference_channel: 113 itraq8plex|correction_matrix: "0.00/0.00/6.89/0.22" "0.00/0.94/5.90/0.16" "0.00/1.88/4.90/0.10" "0.00/2.82/3.90/0.07" "0.06/3.77/2.99/0.00" "0.09/4.71/1.88/0.00" "0.14/5.66/0.87/0.00" "0.27/7.44/0.18/0.00" quantification|isotope_correction: True quantification|normalization: False tmt10plex|channel_126_description: tmt10plex|channel_127N_description: tmt10plex|channel_127C_description: tmt10plex|channel_128N_description: tmt10plex|channel_128C_description: tmt10plex|channel_129N_description: tmt10plex|channel_129C_description: tmt10plex|channel_130N_description: tmt10plex|channel_130C_description: tmt10plex|channel_131_description: tmt10plex|reference_channel: 126 tmt10plex|correction_matrix: "0.0/0.0/5.09/0.0" "0.0/0.25/5.27/0.0" "0.0/0.37/5.36/0.15" "0.0/0.65/4.17/0.1" "0.08/0.49/3.06/0.0" "0.01/0.71/3.07/0.0" "0.0/1.32/2.62/0.0" "0.02/1.28/2.75/2.53" "0.03/2.08/2.23/0.0" "0.08/1.99/1.65/0.0" tmt11plex|channel_126_description: tmt11plex|channel_127N_description: tmt11plex|channel_127C_description: tmt11plex|channel_128N_description: tmt11plex|channel_128C_description: tmt11plex|channel_129N_description: tmt11plex|channel_129C_description: tmt11plex|channel_130N_description: tmt11plex|channel_130C_description: tmt11plex|channel_131N_description: tmt11plex|channel_131C_description: tmt11plex|reference_channel: 126 tmt11plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" tmt16plex|channel_126_description: tmt16plex|channel_127N_description: tmt16plex|channel_127C_description: tmt16plex|channel_128N_description: tmt16plex|channel_128C_description: tmt16plex|channel_129N_description: tmt16plex|channel_129C_description: tmt16plex|channel_130N_description: tmt16plex|channel_130C_description: tmt16plex|channel_131N_description: tmt16plex|channel_131C_description: tmt16plex|channel_132N_description: tmt16plex|channel_132C_description: tmt16plex|channel_133N_description: tmt16plex|channel_133C_description: tmt16plex|channel_134N_description: tmt16plex|reference_channel: 126 tmt16plex|correction_matrix: "0.0/0.0/8.02/0.0" "0.0/0.68/7.46/0.0" "0.0/0.71/6.94/0.0" "0.0/1.88/6.67/0.0" "0.0/1.34/5.59/0.0" "0.0/2.41/5.48/0.0" "0.0/2.34/5.19/0.0" "0.0/3.53/4.57/0.0" "0.0/2.67/4.16/0.0" "0.0/3.92/3.73/0.0" "0.0/3.69/3.14/0.0" "0.0/3.22/2.76/0.0" "0.0/4.11/2.0/0.0" "0.0/3.85/1.58/0.0" "0.0/4.63/1.18/0.0" "0.0/5.22/0.86/0.0" tmt6plex|channel_126_description: tmt6plex|channel_127_description: tmt6plex|channel_128_description: tmt6plex|channel_129_description: tmt6plex|channel_130_description: tmt6plex|channel_131_description: tmt6plex|reference_channel: 126 tmt6plex|correction_matrix: "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
MS3_nonHierarchical.mzML value |