Repository revision
22:1d6af10874d5

Repository 'hicexplorer_hicsummatrices'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices

hicSumMatrices tool metadata
Miscellaneous
hicSumMatrices
combine Hi-C matrices of the same size
hicexplorer_hicsummatrices
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.7.5+galaxy0
3.7.5+galaxy0
hicSumMatrices --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.7.5+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.7.2+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.6+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.4.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.3.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/2.1.4.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/2.1.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/2.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/2.0.1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/2.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/1.8.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/1.8.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/1.7.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/1.7.1.0
hicexplorer_hicsummatrices
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.7.5 package
Additional information about this tool
#for $counter, $m in enumerate($matrix_h5_cooler_multiple):
            ln -s '$m' '${counter}_matrix.$m.ext' &&
        #end for
        #set $m = ' '.join([ '\'%s_matrix.%s\'' % ($counter, $matrix.ext) for $counter, $matrix in enumerate($matrix_h5_cooler_multiple) ])
        #set $extension = $matrix_h5_cooler_multiple[0].ext
        hicSumMatrices
            --matrices $m
            --outFileName 'matrix.$extension'

        && mv 'matrix.$extension' matrix
None
False
Functional tests
name inputs outputs required files
Test-1 matrix_h5_cooler_multiple: ['small_test_matrix.h5', 'small_test_matrix.h5']
 name: value
 small_test_matrix.h5
value
Test-2 matrix_h5_cooler_multiple: ['small_test_matrix.cool', 'small_test_matrix.cool']
 name: value
 small_test_matrix.cool
value