Revision: 9:35176674168c

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs

Miscellaneous

Name: dada2: mergePairs

Description: Merge denoised forward and reverse reads

Id: dada2_mergePairs

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.30.0+galaxy0

Version: 1.30.0+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.34.0+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.30.0+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.28+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.28+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.20+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.20+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.18+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.16+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.12+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.12+galaxy0

dada2_mergePairs

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
bioconductor-dada2	1.30.0	package

Functional tests

name	inputs	outputs	required files
Test-1	dadaF: dada_F3D0_S188_L001_R1.Rdata derepF: filterAndTrim_F3D0_R1.fq.gz dadaR: dada_F3D0_S188_L001_R2.Rdata derepR: filterAndTrim_F3D0_R2.fq.gz	name: value	dada_F3D0_S188_L001_R1.Rdata filterAndTrim_F3D0_R1.fq.gz dada_F3D0_S188_L001_R2.Rdata filterAndTrim_F3D0_R2.fq.gz value
Test-2	dadaF: dada_F3D0_S188_L001_R1.Rdata derepF: filterAndTrim_F3D0_R1.fq.gz dadaR: dada_F3D0_S188_L001_R2.Rdata derepR: filterAndTrim_F3D0_R2.fq.gz minOverlap: 8 maxMismatch: 1 justConcatenate: True trimOverhang: True output_details: True	name: value name: value	dada_F3D0_S188_L001_R1.Rdata filterAndTrim_F3D0_R1.fq.gz dada_F3D0_S188_L001_R2.Rdata filterAndTrim_F3D0_R2.fq.gz value