Repository revision
7:5c865a382933

Repository 'dada2_mergepairs'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs

dada2: mergePairs tool metadata
Miscellaneous
Merge denoised forward and reverse reads
dada2_mergePairs
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.28+galaxy0
1.28+galaxy0
echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.28+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.28+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.20+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.20+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.18+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.16+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.14+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.12+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.12+galaxy0
dada2_mergePairs
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-dada2 1.28 package
Functional tests
name inputs outputs required files
Test-1 dadaF: dada_F3D0_S188_L001_R1.Rdata
derepF: filterAndTrim_F3D0_R1.fq.gz
dadaR: dada_F3D0_S188_L001_R2.Rdata
derepR: filterAndTrim_F3D0_R2.fq.gz
name: value
dada_F3D0_S188_L001_R1.Rdata
filterAndTrim_F3D0_R1.fq.gz
dada_F3D0_S188_L001_R2.Rdata
filterAndTrim_F3D0_R2.fq.gz
value
Test-2 dadaF: dada_F3D0_S188_L001_R1.Rdata
derepF: filterAndTrim_F3D0_R1.fq.gz
dadaR: dada_F3D0_S188_L001_R2.Rdata
derepR: filterAndTrim_F3D0_R2.fq.gz
minOverlap: 8
maxMismatch: 1
justConcatenate: True
trimOverhang: True
name: value
dada_F3D0_S188_L001_R1.Rdata
filterAndTrim_F3D0_R1.fq.gz
dada_F3D0_S188_L001_R2.Rdata
filterAndTrim_F3D0_R2.fq.gz
value