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dada2: mergePairs tool metadata

Miscellaneous

Name: dada2: mergePairs

Description: Merge denoised forward and reverse reads

Id: dada2_mergePairs

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.34.0+galaxy0

Version: 1.34.0+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.34.0+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.30.0+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.28+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.28+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.20+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.20+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.18+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.16+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.12+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_mergepairs/dada2_mergePairs/1.12+galaxy0

dada2_mergePairs

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

bioconductor-dada2

1.34.0

package

Additional information about this tool

Command:

Rscript '$dada2_script'

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

dadaF: dada_F3D0_S188_L001_R1.Rdata
derepF: filterAndTrim_F3D0_R1.fq.gz
dadaR: dada_F3D0_S188_L001_R2.Rdata
derepR: filterAndTrim_F3D0_R2.fq.gz

name: value

dada_F3D0_S188_L001_R1.Rdata
filterAndTrim_F3D0_R1.fq.gz
dada_F3D0_S188_L001_R2.Rdata
filterAndTrim_F3D0_R2.fq.gz
value

Test-2

dadaF: dada_F3D0_S188_L001_R1.Rdata
derepF: filterAndTrim_F3D0_R1.fq.gz
dadaR: dada_F3D0_S188_L001_R2.Rdata
derepR: filterAndTrim_F3D0_R2.fq.gz
minOverlap: 8
maxMismatch: 1
justConcatenate: True
trimOverhang: True
output_details: True

name: value
name: value

dada_F3D0_S188_L001_R1.Rdata
filterAndTrim_F3D0_R1.fq.gz
dada_F3D0_S188_L001_R2.Rdata
filterAndTrim_F3D0_R2.fq.gz
value